Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11873 ATGTATGTATCTATGTGCATGAAAAAAGATGCTCCAATGTGTGAAAAATTTCATTTTGTGCCATCGCTTTACTCCTCAAAACCCCACCATCACTCCCACCTCTCTCTCAGTCTCAGACCCAATTCCGAACCCTTCTCTCAAAACGGTGCGCTCTCTCTAACAACAACACCAACACTAACTTCACTTCTTACTTGTTCTCTTTCATTCTTCATTCTTTCTCGCACCTTAAAACAGTATCTATACGGTGGTTTTTACGGCGCCGGAGTAGCCGACCAATTCTCGCCGGCAGAGAAGCGCCACAGCGACCAGAAACCCGGCGAGCCTTTTGCCATTGATGACCTACTGGACTTCTCCAATGCAGACGCCATTATGTCCGATGGTTTCTTTGACAATGTCGCCGGAAACTCTGCCGACTCCTCCACCGTCACTGCCGTCGACAGTTGCAACTCCTCAATTTCCGGCGGTGATAACCACTTCGCCGCCGCCATTGTCCCTCGCGGCTTCGCCTGCGATCCTCAACTCACCGGTGAACTCTGTGTTCCGTACGATGACATGGCGGAACTGGAATGGCTCTCGAACTTCGTGGAAGACTCGTTCTCCGCCGAAGAGGAGTTGAAAACGCTGCAACTTCTCTCCGGCGCTGCTGCTTCCTCAACCGTTGGTGCTAAGCCTCAGACGCCGGAGTCGTCCTCTTCCACCGACACTCTCCCGCCGTTCGCCACCGACGACAGCACTCGAAACGCACCATTTCTCCATTCGGAAACCCCGCTCCCGGGGAAGGCACGCAGCAAGCGTTCACGCGCGGCGCCGGGCGACTGGTCCACGCGCCTCCTTCACCTTGCTGTGCCATCTGACGCGCCGCCACAGCCGAAGGTGGTACCGGCGAAGAAGCGGGAAGGTTCGAACGCGGAGTGCTCAGGGAGGAAATGCCTTCACTGCGGCGCGGAGAAAACGCCGCAGTGGCGGACGGGGCCAATGGGACCGAAGACGCTGTGCAATGCGTGCGGTGTGAGGTTCAAGTCCGGTAGGCTGGTGCCGGAGTACCGGCCGGCGGCGAGCCCGACGTTCGTGTCGACGAAGCACTCGAATTCGCATAGGAAAGTTTTGGAGTTGAGGAGGCAAAAGGATCTGCAACGACAGCAGCATCAGCAACTGATGAGTCAGACTTCGATTTTCGGCGTATCCAACGGTGGAGATGACTTCATGATTCATCATCATCATCACCATTGTGGGCCAGACTTTAGGCATGTTATCTAG 1257 0.5537 MYVSMCMKKDAPMCEKFHFVPSLYSSKPHHHSHLSLSLRPNSEPFSQNGALSLTTTPTLTSLLTCSLSFFILSRTLKQYLYGGFYGAGVADQFSPAEKRHSDQKPGEPFAIDDLLDFSNADAIMSDGFFDNVAGNSADSSTVTAVDSCNSSISGGDNHFAAAIVPRGFACDPQLTGELCVPYDDMAELEWLSNFVEDSFSAEEELKTLQLLSGAAASSTVGAKPQTPESSSSTDTLPPFATDDSTRNAPFLHSETPLPGKARSKRSRAAPGDWSTRLLHLAVPSDAPPQPKVVPAKKREGSNAECSGRKCLHCGAEKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVSTKHSNSHRKVLELRRQKDLQRQQHQQLMSQTSIFGVSNGGDDFMIHHHHHHCGPDFRHVI. 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11873 418 CDD ZnF_GATA 309 356 IPR000679 GO:0006355|GO:0043565
Seca4g11873 418 Pfam GATA zinc finger 310 343 IPR000679 GO:0006355|GO:0043565
Seca4g11873 418 PANTHER GATA TRANSCRIPTION FACTOR 98 383 - -
Seca4g11873 418 ProSitePatterns GATA-type zinc finger domain. 310 335 IPR000679 GO:0006355|GO:0043565
Seca4g11873 418 Gene3D - 304 354 IPR013088 GO:0006355|GO:0008270
Seca4g11873 418 MobiDBLite consensus disorder prediction 218 270 - -
Seca4g11873 418 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 307 367 - -
Seca4g11873 418 SMART GATA_3 304 354 IPR000679 GO:0006355|GO:0043565
Seca4g11873 418 FunFam GATA transcription factor 300 385 - -
Seca4g11873 418 Coils Coil 368 388 - -
Seca4g11873 418 MobiDBLite consensus disorder prediction 218 251 - -
Seca4g11873 418 ProSiteProfiles GATA-type zinc finger domain profile. 304 340 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11873 Seca-Chr4 259392640 259394437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11873 107 418 C2C2-Gata Transcription Factor Family AT4G32890 45.988 1.38e-84 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca4g11873 GATA 5.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11873 - - gmx:100776605 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11873 4 259392640 259394437 Seca4g11873 4 259392640 259394437 ECH