Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11872 ATGTCCTGCAAGGATGGTAGCAAAATCGCACTGGATAACGGCAAGTATGTCCGTTACACACCTGAGCAGGTTGAAGCCCTCGAGAGGCTTTATCATGACTGCCCTAAACCCAGTTCCATTCGCCGCCAGCAGCTCATACGCGAGTGCCCAATTCTCTCCCACATTGAGCCCAAGCAAATCAAAGTTTGGTTTCAGAACAGAAGATGTAGGGAGAAGCAGAGAAAAGAAGCTTCGCGGCTGCAAGCTGTAAATAGGAAGTTGACTGCCATGAACAAGCTACTGATGGAGGAAAATGATAGGTTGCAGAAGCAGGTGTCTCAACTGGTGTATGAAAATAGCTATTTTCGTCAGAACACCCAAAATACTGTGCAGGCAACCAAAGACACAAGCTGTGAATCAGCGGTGACAAGTGGTCAGCACAATTTGACAACTCAACATCCCCCAAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAATTTCTTTCGAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCTAGAGCCTGTGGTCTTGTGGGACTAGAGCCCACTAGGGTTGCTGAAATCCTCAAAGATCGGCCTTTATGGTTTCGTGATTGCCGAGCTGTTGATGTTCTCAATGTGCTACCCACAGCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTATATGCGCCAACCACATTGGCACCTGCTCGAGACTTCTGGTTGTTGCGCTACACTTCTGTTTTAGAAGATGGAAGCCTAGTGATCTGTGAGAGGTCCCTTAAAAATACTCAAAATGGCCCAAGCATGCCTCCGGTGCAGCATTTTGTTAGAGCAGAGATGCTTCCTAGTGGGTACCTCATAAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCACATGGATTTGGAGCCATGGAGTGTGCCAGAAGTGCTGCGTCCTCTGTATGAATCGTCAACAGTGCTGGCTCAGAAGACAACTATGGCGGCCCTACGTCAGCTAAGGCAGATTTCACATGAGGTTTCTCAGTCTAATAACGTCACCGGATGGGGTAGACGACCAGCAGCTCTACGAGCACTTACTCAGAGATTGAGCCGGTTAGTATATTCTACTAAAGGACATGATTTTGATTCAAGTTCTAAATTTGGAATCTCACATCGATTTCATGGCAGGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAATGATTGGCAATGATGGTGTAGATGATGTTACTATTCTAGTGAATTCATCCCCTGACAAGTTAATGGGTCTGAATCTTTCCTTTTCTAATGGATTTCCTTCTGTCAGTAATGCAGTGTTATGTGCCAAAGCATCAATGCTACTACAGAATGTTCCCCCAGCCGTTCTCCTAAGGTTCTTGCGGGAGCATAGATCAGAATGGGCTGACAACAACATGGATGCTTACACGGCTGCTGCCATTAAAATTGGCCCTTGTAGCTTATCAGGATCTCGCATTGGAAATTATGGGGGTCAAGTTATACTCCCTCTAGCACACACTATTGAGCATGAGGAGTTTTTGGAAGTCATTAAATTGGAAGGAGTTGCTCATTCTCCTGAAGACGCATTAATGCCCAGAGAAGTGTTTCTTTTGCAACTCTGCAGTGGAATGGATGAGAATGCTGTTGGCACCTGTGCTGAACTTATATTTGCCCCAATTGATGCTTCCTTTACTGATGATGCCCCACTTCTACCTTCTGGATTTCGCATCATTCCTCTTGAATCCGGAAAGGAAGCTTCCAGCCCTAATCGCACTCTTGACCTTGCATCTGCCCTTGACATTGGCCCACCTGGAAACCGAGCTACAAATGATTATGCTGGAAATTCTGGCTGCATGAGATCCGTGATGACAATAGCATTTGAATTTGCATTTGAAAGTCATATGCAAGAGCATGTAGCATCTATGGCACGGCAATATGTTCGCAGCATTATATCATCTGTTCAAAGGGTAGCATTAGCACTTTCTCCATCTCATTTGAGTTCACATACTGGGCTTAGGACGCCATTAGGTACTCCTGAAGCACAAACCCTTGCTCATTGGATCTGCAACAGTTATAGGTATGTAACCTTTACTATCTTCAAGGCTGAGGCTGAGGCTGGTGAAATTTGTTTTGCTATCATACAGCTAATGGTGCTTAGGGTCTACTGTCAAAGTAGCAAATACAGTATATTGAGGCATAAGCAGTGCTATGTTGTGCATGTACTTGTTCCTCATAACTTATGCTACTTGGGTGCGGAGCTACTTAAATCTAATAATGAGGGGAACGAAACTTTACTCAAGTCCTTGTGGCATCACTCAGATGCTATATTATGTTGCACTCTAAAGGCATTGCCAGTTTTCACTTTCTCAAACCAGGCAGGGCTTGACATGCTGGAGACTACCCTAGTTGCATTACAAGATATAACTTTAGAGAAAATATTTGATGATCATGGACGAAAAAATCTCTTTTCAGAGTTCCCCCAGATTATTCAACAGGGTTTTGCATGTCTTCAAGGTGGTATTTGTCTCTCAAGCATGGGGCGACCTGTCTCATATGAGAGAGTTGTTGCTTGGAAGGTGCTGAATGAAGAAGAAAATGCTCATTGTATTTGCTTCATGTTTATGAACTGGTCTTTCGTTTGA 2751 0.4486 MSCKDGSKIALDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENSYFRQNTQNTVQATKDTSCESAVTSGQHNLTTQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPLWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALRQLRQISHEVSQSNNVTGWGRRPAALRALTQRLSRLVYSTKGHDFDSSSKFGISHRFHGRGFNEALNGFTDEGWTMIGNDGVDDVTILVNSSPDKLMGLNLSFSNGFPSVSNAVLCAKASMLLQNVPPAVLLRFLREHRSEWADNNMDAYTAAAIKIGPCSLSGSRIGNYGGQVILPLAHTIEHEEFLEVIKLEGVAHSPEDALMPREVFLLQLCSGMDENAVGTCAELIFAPIDASFTDDAPLLPSGFRIIPLESGKEASSPNRTLDLASALDIGPPGNRATNDYAGNSGCMRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHTGLRTPLGTPEAQTLAHWICNSYRYVTFTIFKAEAEAGEICFAIIQLMVLRVYCQSSKYSILRHKQCYVVHVLVPHNLCYLGAELLKSNNEGNETLLKSLWHHSDAILCCTLKALPVFTFSNQAGLDMLETTLVALQDITLEKIFDDHGRKNLFSEFPQIIQQGFACLQGGICLSSMGRPVSYERVVAWKVLNEEENAHCICFMFMNWSFV. 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11872 916 CDD homeodomain 15 75 IPR001356 GO:0003677
Seca4g11872 916 CDD bZIP 67 106 - -
Seca4g11872 916 SMART START_1 158 368 IPR002913 GO:0008289
Seca4g11872 916 CDD START_ArGLABRA2_like 153 368 - -
Seca4g11872 916 ProSiteProfiles 'Homeobox' domain profile. 10 74 IPR001356 GO:0003677
Seca4g11872 916 FunFam homeobox-leucine zipper protein ATHB-15 194 375 - -
Seca4g11872 916 ProSiteProfiles START domain profile. 149 364 IPR002913 GO:0008289
Seca4g11872 916 Pfam Homeodomain 15 73 IPR001356 GO:0003677
Seca4g11872 916 Coils Coil 70 111 - -
Seca4g11872 916 SUPERFAMILY Homeodomain-like 13 78 IPR009057 -
Seca4g11872 916 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 11 397 IPR044830 GO:0003700
Seca4g11872 916 SUPERFAMILY Bet v1-like 158 367 - -
Seca4g11872 916 Gene3D - 8 81 - -
Seca4g11872 916 Pfam START domain 159 367 IPR002913 GO:0008289
Seca4g11872 916 FunFam Homeobox-leucine zipper protein REVOLUTA 15 70 - -
Seca4g11872 916 Pfam MEKHLA domain 785 915 IPR013978 -
Seca4g11872 916 Gene3D - 193 375 IPR023393 -
Seca4g11872 916 SMART HOX_1 12 78 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11872 Seca-Chr4 259369745 259379199 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11872 1 868 Homeobox Transcription Factor Family AT1G52150 76.552 0.0 1347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca4g11872 START 1.7e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11872 K09338 - gmx:100800165 1558.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11872 4 259369745 259379199 Seca4g11872 4 259369745 259379199 ECH
Seca4g11872 4 259369745 259379199 Seca4g08695 4 206915179 206922424 PCT