Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11866 ATGGGTTTTGCAATAAGGAAAGATGATGTAAAGAAGGATGTTAGGGGCCAGGTTCGAATGCGGCAATTTGTTTGCAGTAGGGAGGGTCAAAGGAACAAAAAACATTTAATGCGGGTTGATAGAAAAAGGGAACATAGACGATTGACTCGGACTTCATGTCGTGCTAAACTCCGTGTTCACTATAATCTGAAGACAAATAGGTGGAAAGTGGTTTCATTTGTCCACACTCATAACCATGAACTATGCCCATCAGGATTTAGGCACCTGATTAGTGCATATCGCTGTATTCGGGATTCAGATAAAGCACAGATAGATAGCTTGCATGCACATGGGGTAAGAACCTGCCACATAATGGGTTATTTGGTAGCTCAGAGAGGGGGATATGTTAATCTGAGTTTTATGAGAAAGGATGTGTATAATTATCTTGATAGCAAAAATCGCCTTCGGATTAAAGGTGGGGACGCACATGCTGCGTTAAGTTATCTTCAAGGCAAATCTAATAGTGATCCTGTGCTATTTTGCAAGTACACGATTGATGAGATGGATAGATTGAAGACCCTATTTTGGGCTGATGGTGCATGTGTGTCTGACTATTTATGCTTCGGTGATGTTCTAGCCTTTGACACCACATATAAGAAGAATAAATACCATCATCCTTTGGTTATTTTCTCTGGGTGTAATCACCATTCCCAAATTGTTATTTTTGGCTTTGCATTGGTTCCAGATGAGACAATTGAGACATACAAGTGGGTCCTTGAAGCTTTTTTGCAGGCAATGTTCTACAAACAACCAAAATCTGTTGTGACAGATGGAGATGGAGCTATGAGAGAGGCCATTAAGCAAGTCTTTCCCAATGCATCACACAGATTATGTGCTTGGCACTTGCAGAAAAATGCATGTGAAAATGTAAAAAGTGCTTCTTTTTTACAAGACTTCCAGACTGTTGTGTACTCGAATTTCACCCCAGACAAATTTGAAGTGTATTGGAAGAAGATGGTTTCGAAACATGGATTGGAAAGGAACAATTGGGTTACTAAAACCTATGAGAACAAATCATTATGGGCCACAACATATTTCCGTGATAAGTTCTTTGGTAGAATAATAACTACTTCTCAATGTGAGGCTATAAATTCATTTATAAAGGCATATGTACGGAAGAGGAGCAGTTTTGTTGAATTAATGCATAATATTGATCAATCCTTGAGAGAGTATAGAAATAATGAACTGATTGTAGATTACAAGTCATTATTCTCAGAACCTGTGTTGACTACATCATTATATAAGAAAGATGCGGCCAAAACCTACACTCAAGAAATTTATAAAGAGGTGAAGCGTGAGATTGAAAAGGCAGGTGCGTTAAATGTTATTCAGCGTAGTGTAAGTGGTGAGAAGTTGTTGTTCAAGCTTGGGGAGTATTGCAACCGTGATAAAGAAAGAAGTGTTGATTATGATCCTTCAAGGTCAGACTTCAGTTGTGAGTGTAGACTCTTTCAGTCTCGTGGCATTCCATGCTCGCACATTATATGTGTGATGAAAATTGAACATGTTGATCACATTCCTAGAAGTTTGATATTGGCACGGTGGACAAAGTATGCGAAGAGAAATTTCATGTCGGCTAATATCGTGCAGGAACTACCATCTGATGTGACCAATAGCTCTCAAATTGTTGCCTTATCTGCTGCCTTTAGAAGGTTATGCAGTGTTACAGAAAAAAAGAGGTCAATTTTCAATGATTTGATGGATGACGTATTCAATGTTGTTGAGAAGTATGAGAAGATAGTGGGTGAAGAAAGTTCTGAAAGATCATCAGTTAAAGTTAAAGAGGTTCGTGATCCAACTATAGTTAAAACAAAAGGTGCTCCTAAGAAGAAAAAATTTGCGACAAGGAGGAAGAAGCATTGCTCAAATTGTACTAGTATAGGACACACAATTAGGAGTTGTCCAATGCGCAACGGATTAAATGCTATGAGTAAGAAAGATCTTGAGAAGTTGTCTTCAGACTCTTCTGACACATGCAAAGACCTTGATAATGATAAGGAATCACCTCTGAATGAAGGGTTTGATGATGGTGACAATGTTGACCCTGAAGCGATCGGAAGCCAAAATGTTAAAAAAGGGAAGGATAAAGTTGAGGGTTCTTGTAAAAGAAAGAAAACAAAAGCAATAGGTACGACCCAGGAGTCACTGTTTAGAGGGTTTGAGGATGGAGACAATGACCACCCCAAAGATATTGGAAGCCAAAATGACAAAAAAGGGAAGGATAAAGTCGATGAATCTTCTAAAAGGAAGAAAACAAATGTGTATGGGAAGACGCATGAATCAGAGAAGAAATGTGAGATCAGTGGATGTTCTACTGGAGTTAGACCTGTAGTAACTCATGAGGAAAGTACCTTACCTGAAGCTCATATTCCCCAATATGGCCAAGGGGTGACCTTGAATTGTAATGTGGGTGTTGTTCCAGTGTACCCAAATCATTCCCACGTTCCTCATTTTCATCATAATACACAAGCGCATGTTTTTCCGCCTAATACTCATGGTATTGTCTACCCTCATAGTACCCAAGTTGGTTTTTATCCTCAGAATGGTCAACTTCCTATTTACCATCATAATTCAAGTATTCCTGGTGGCAATCAAGTTCCTGAGTTCTTTTCGGGCATGGAAAATTTAAACAATGGCACATCCATTTCTGAATTGCTTCAACAAGTAATGAAGAACGGTGGACAGAATAGTAACGGTGTTTATAATTTTCAATGA 2754 0.3878 MGFAIRKDDVKKDVRGQVRMRQFVCSREGQRNKKHLMRVDRKREHRRLTRTSCRAKLRVHYNLKTNRWKVVSFVHTHNHELCPSGFRHLISAYRCIRDSDKAQIDSLHAHGVRTCHIMGYLVAQRGGYVNLSFMRKDVYNYLDSKNRLRIKGGDAHAALSYLQGKSNSDPVLFCKYTIDEMDRLKTLFWADGACVSDYLCFGDVLAFDTTYKKNKYHHPLVIFSGCNHHSQIVIFGFALVPDETIETYKWVLEAFLQAMFYKQPKSVVTDGDGAMREAIKQVFPNASHRLCAWHLQKNACENVKSASFLQDFQTVVYSNFTPDKFEVYWKKMVSKHGLERNNWVTKTYENKSLWATTYFRDKFFGRIITTSQCEAINSFIKAYVRKRSSFVELMHNIDQSLREYRNNELIVDYKSLFSEPVLTTSLYKKDAAKTYTQEIYKEVKREIEKAGALNVIQRSVSGEKLLFKLGEYCNRDKERSVDYDPSRSDFSCECRLFQSRGIPCSHIICVMKIEHVDHIPRSLILARWTKYAKRNFMSANIVQELPSDVTNSSQIVALSAAFRRLCSVTEKKRSIFNDLMDDVFNVVEKYEKIVGEESSERSSVKVKEVRDPTIVKTKGAPKKKKFATRRKKHCSNCTSIGHTIRSCPMRNGLNAMSKKDLEKLSSDSSDTCKDLDNDKESPLNEGFDDGDNVDPEAIGSQNVKKGKDKVEGSCKRKKTKAIGTTQESLFRGFEDGDNDHPKDIGSQNDKKGKDKVDESSKRKKTNVYGKTHESEKKCEISGCSTGVRPVVTHEESTLPEAHIPQYGQGVTLNCNVGVVPVYPNHSHVPHFHHNTQAHVFPPNTHGIVYPHSTQVGFYPQNGQLPIYHHNSSIPGGNQVPEFFSGMENLNNGTSISELLQQVMKNGGQNSNGVYNFQ. 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11866 917 Pfam FAR1 DNA-binding domain 1 82 IPR004330 -
Seca4g11866 917 ProSiteProfiles Zinc finger SWIM-type profile. 477 515 IPR007527 GO:0008270
Seca4g11866 917 MobiDBLite consensus disorder prediction 661 769 - -
Seca4g11866 917 SMART 26again6 490 517 IPR006564 GO:0008270
Seca4g11866 917 MobiDBLite consensus disorder prediction 701 722 - -
Seca4g11866 917 PANTHER OS01G0519700 PROTEIN 2 638 - -
Seca4g11866 917 Pfam MULE transposase domain 204 298 IPR018289 -
Seca4g11866 917 MobiDBLite consensus disorder prediction 732 769 - -
Seca4g11866 917 MobiDBLite consensus disorder prediction 661 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11866 Seca-Chr4 259330282 259334790 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g11866 MULE 1.5e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11866 - - ccaj:109792835 849.736