Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11865 ATGGATGATATTGACAGTGGAGGTCGCAGCAATGATAAGGCCAATGCCGGTGAAGATGATGGGAACGCTTGTTCGCTTCCTGAAAAGGTTCAAGTAGGTAATTCCCCTTGGTATAAAGTAGAAAGGAAACTTGGCAAGGGTGGATTTGGTCAGGTATATGTTGGTCGACGTGTTTCTGGTGCAAATTTGAGTGAGAGAACTGGACCTGGAGCGGTAGAGGTTGCAATGAAATTTGAGCATAAAAGTAGTAAAGGATGTAACTATGGACCACCCCATGAATGGCAAGTGTACAACACTCTTGGTGGAAGTCATGGTGTACCCCAAGTACATTACAAGGGCAAGCAAGGTGACTATTTTATCATGATTATGGATATGCTGGGACCTAGCTTGTGGGATGTTTGGAACAACAACTCTCACACCATGTCCACTGAAATGGTTGCTTGTATCGCCATCGAAGCAATATCCATATTAGAGAAGATGCACTCTCGAGGGTATGTGCATGGGGATGTGAAGCCTGAAAATTTTCTGCTTGGTGCTCCTGGGACACCTGATGAGAAAAAATTGTTCCTTGTAGATCTTGGATTAGCTACAAAATGGCGGGATAGTACAACAGGTTTGCATGTGGAATATGATCAAAGGCCAGATGTTTTTAGGGGCACAGTCCGCTATGCTAGTGTACATGCACACTTGGGGAGAACTAGTAGCAGGAGGGATGATTTGGAATCTCTTGCATATACTCTGATTTTTCTTCTTCGAGGTCGACTTCCTTGGCAGGGATTCCAGGGTGATAACAAAGGATTTCTGGTTTGCAAGAAGAAGATGGGAACAAGTCCAGATGTCCTATGCAGCTTTTGTCCCCAACCTTTTAAATTGTTTGTTGAGCATGTAGTGAACTTAAAGTTTGATGAAGAGCCTAACTATCCGAAATACATTTCTCTATTTGATGGGATTGTGGGTCCAAACCCAGATATTAGGCCAATTAATACAGAAGGTGCACAAAAGCTCATTGGTCATAAGAGAGGCCGTTTGGCAATGGAAGAGGAAGATGATGAACAACCCAAAAAGAAGTTTCGTATGGGTTTGCCAGCATCCCAGTGGATAAGTGTTTATAATGCTCGTAAACCGATGAAACAAAGGTATCACTACAATGTATCAGAGACAAGGCTATCCCAGCACATTGAGAAAGGAAACGAGGATGGCTTATTTATTAGCAGTGTTGCTTCATGTATGAACCTATGGGCCTTAATCATGGATGCAGGGACAGGTTTTACTTCCCAAGTTTATGAACTCTCCCCTCATTTTCTCCATAAGGAATGGATCATGGAGCAGTGGGAAAAAAATTACTACATCAGCGCAATTGCTGGAGCTGTAAATGGGAGCTCATTAGTAGTAATGTCTAAGGGCACACAATATTTGCAGCAATCGTACAAAGTTAGTGACTCGTTTCCTTTCAAGTGGATTAACAAAAAGTGGAGGGAGGGCTTTTTTGTGACTGCAATGGCCACCTCGGGGCCCAGATGGGGAGTAGTTATGTCCCGTGGTGCAGGATTTTCTGACCAGGTGGTTGAACTAGATTTTCTGTATCCTAGTGAAGGGGTTCATAAGCGGTGGGATTGTGGATACCGAATCACAGCGGCTGCTGCAAATTGGGACCAAGCTGCTCTTGTCCTGAGTGTGCCAAGGAGGAAGCCCCTGGATGAAACTCAGGAAACACTTAGGACTACTGCTTTTCCTAGTACACATGTCAAGGAGAAATGGGCGAAGAACCTCTACATTGCTTCTGTTTGCTACGGACGTACAGTTTCTTGA 1809 0.4406 MDDIDSGGRSNDKANAGEDDGNACSLPEKVQVGNSPWYKVERKLGKGGFGQVYVGRRVSGANLSERTGPGAVEVAMKFEHKSSKGCNYGPPHEWQVYNTLGGSHGVPQVHYKGKQGDYFIMIMDMLGPSLWDVWNNNSHTMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGAPGTPDEKKLFLVDLGLATKWRDSTTGLHVEYDQRPDVFRGTVRYASVHAHLGRTSSRRDDLESLAYTLIFLLRGRLPWQGFQGDNKGFLVCKKKMGTSPDVLCSFCPQPFKLFVEHVVNLKFDEEPNYPKYISLFDGIVGPNPDIRPINTEGAQKLIGHKRGRLAMEEEDDEQPKKKFRMGLPASQWISVYNARKPMKQRYHYNVSETRLSQHIEKGNEDGLFISSVASCMNLWALIMDAGTGFTSQVYELSPHFLHKEWIMEQWEKNYYISAIAGAVNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFFVTAMATSGPRWGVVMSRGAGFSDQVVELDFLYPSEGVHKRWDCGYRITAAAANWDQAALVLSVPRRKPLDETQETLRTTAFPSTHVKEKWAKNLYIASVCYGRTVS. 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11865 602 ProSitePatterns Protein kinases ATP-binding region signature. 44 77 IPR017441 GO:0005524
Seca4g11865 602 Pfam Protein kinase domain 38 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11865 602 PANTHER CASEIN KINASE-RELATED 32 560 - -
Seca4g11865 602 CDD STKc_CK1 38 314 - -
Seca4g11865 602 FunFam casein kinase 1-like protein HD16 11 358 - -
Seca4g11865 602 Gene3D Transferase(Phosphotransferase) domain 1 5 358 - -
Seca4g11865 602 ProSiteProfiles Protein kinase domain profile. 38 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11865 602 SMART serkin_6 38 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11865 602 MobiDBLite consensus disorder prediction 1 16 - -
Seca4g11865 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Seca4g11865 602 MobiDBLite consensus disorder prediction 1 28 - -
Seca4g11865 602 SUPERFAMILY Protein kinase-like (PK-like) 38 318 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11865 Seca-Chr4 259315054 259321116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11865 9 262 AGC Kinase Gene Family AT3G08720 22.568 2.08e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Seca4g11865 Pkinase 2.5e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11865 - - gmx:100800869 1143.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11865 4 259315054 259321116 Seca4g11865 4 259315054 259321116 ECH