Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11858 ATGATCTCCTCCATTAGATGCACCTTCCTGTGCAACTCAAGCACAGGTGGGTGGTCCAGCAACTCCTCTGGTTCACAGAGAAAACATTCAGGTCCTTCGAGGGTGGCTTGTTCAGCTCCAAGCAGGAGTTCAACTGAGAGACACAGCATCGTTGTGATGGAGACATCATTGAAAGAGACAAGTAACGAGTCCACGGTGGCTGACATCGACGATAACCTCACCTCTGCTGGTGGCGTTCGGGATGTGTACGGCGAGGATAGGGCCACAGAGGATCAGATGGTTACTCCTTGGAGTGTCTCTGTTGCTAGTACTTTGTTGGTTTTTAGTGGGTATACTTTGTTGAGAGATCCACATTTCAACAAAGGATTGGCCTTCACTGAAAATGAGAGGGACGCACACTACTTGCGTGGTCTTCTTCCCCCAATAGTTATCTCTCAAGAAACTCAGGTGAAGAAATTGATCCAACACATACGCCAGTATCAAGTTCCATTGCAAAAGTACATGGCTATGATGGATCTTCAGGAGAGAAATGAAAGGCTGTTTTACAAGCTTCTAACTGATCATGTTGAGGAGTTACTTCCAGTTGTCTATACTCCAACTGTTGGTGAAGCTTGCCAGAAATATGGGAGCATCTTCATGCATCCTCAGGGTCTATATATAAGTTTGAAAGAGAAAGGGAGGATTCTTGAAGTACTTAGGAATTGGCCTGAGAAGAACATTCAAGTCATTGTTGTAACTGATGGAGAACGGATCCTGGGTCTTGGGGATCTTGGCTGTCAAGGGATGGGAATACCTGTGGGAAAACTTTCTTTATATACAGCACTTGGTGGAGTTCGCCCTTCTTCTTGCTTGCCTATTACCATTGATGTGGGTACAAACAATGAGAAGCTGTTGAATGACGAATTATATATAGGGCTCAAGCATAGACGAGCAACTGGGCAGGAATATTCTGAACTTATTCATGAATTTATGACTGCGGTCAAGCAAAATTATGGAGAAAAAATCCTCATCCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGATCTACTTGAAAAATATAGGTCAACGCATCTTGTTTTTAATGATGATATTCAGGGAACTGCATCAGTGGTCCTAGCAGGGCTGGTTGCAGCTCTGAAATTGGTTGGGGGAAGCTTGGCTGACCATAGGTTCTTATTCCTTGGTGCTGGAGAGGCTGGAACTGGAATAGCAGAACTCATAGCACTTGAAACATCCAAACGGACAAATGCCCCACTGGATGAAGTGCGCAAGAACATTTGGTTGGTGGACTCAAAGGGTTTGATTGTCAGTTCCCGTAAAGAATCACTCCAACATTTTAAGAAGCCCTGGGCTCATGAACATGAACCTGTTAAGGAACTTGTAGATGCTATTAATCAAATTAAGCCAACAGTGTTGATTGGAACATCAGGAAAAGGGAGAACTTTTACTAAAGAAGTGGTTGAGGCTATGGCCTCCATTAATGAGAAACCTATTATTCTTGCTCTATCCAACCCAACGTCACAGGCAGAATGTACTGCTGAAGAAGCTTATACATGGAGCCAGGGGCTTGCTATTTATGCTAGCGGGAGCCCATTTGCCCCAGTTGAATATGATGGAAAAGTGTTTGTGCCTGGCCAGGCCAATAATGCATACATTTTTCCTGGATTTGGTCTTGGTTTAATAATGTCTGGGACCATCCGTGTCCATGATGATCTGCTTCTGGCAGCTTCTGAGGCTTTGGCTTCACAAGTGACCCAGCAAGACTTTGACAAGGGGCTCATATTCCCACCATTCACTAACATCAGGAAGATTTCAGCACAAATAGCTGCCAATGTGGCTCTTAAGGCCTATGAGTTTGGCTTGGCCACTCGCCTTCCTCAACCAAAAGATTTGGTGAAGTTTGCTGAGAGCTGTATGTATACCCCAACTTATAGAAGCTACCGGTGA 1950 0.4441 MISSIRCTFLCNSSTGGWSSNSSGSQRKHSGPSRVACSAPSRSSTERHSIVVMETSLKETSNESTVADIDDNLTSAGGVRDVYGEDRATEDQMVTPWSVSVASTLLVFSGYTLLRDPHFNKGLAFTENERDAHYLRGLLPPIVISQETQVKKLIQHIRQYQVPLQKYMAMMDLQERNERLFYKLLTDHVEELLPVVYTPTVGEACQKYGSIFMHPQGLYISLKEKGRILEVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNEKLLNDELYIGLKHRRATGQEYSELIHEFMTAVKQNYGEKILIQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLVAALKLVGGSLADHRFLFLGAGEAGTGIAELIALETSKRTNAPLDEVRKNIWLVDSKGLIVSSRKESLQHFKKPWAHEHEPVKELVDAINQIKPTVLIGTSGKGRTFTKEVVEAMASINEKPIILALSNPTSQAECTAEEAYTWSQGLAIYASGSPFAPVEYDGKVFVPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALASQVTQQDFDKGLIFPPFTNIRKISAQIAANVALKAYEFGLATRLPQPKDLVKFAESCMYTPTYRSYR. 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11858 649 CDD NAD_bind_1_malic_enz 365 643 - -
Seca4g11858 649 Pfam Malic enzyme, NAD binding domain 365 617 IPR012302 GO:0051287
Seca4g11858 649 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 365 648 IPR036291 -
Seca4g11858 649 SMART malic_2 174 355 IPR012301 GO:0004471
Seca4g11858 649 Pfam Malic enzyme, N-terminal domain 174 355 IPR012301 GO:0004471
Seca4g11858 649 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 93 364 IPR046346 -
Seca4g11858 649 FunFam Malic enzyme 363 649 - -
Seca4g11858 649 SMART Malic_M_2 365 618 IPR012302 GO:0051287
Seca4g11858 649 Gene3D - 363 649 - -
Seca4g11858 649 FunFam Malic enzyme 108 362 - -
Seca4g11858 649 Gene3D - 109 362 IPR037062 GO:0004471
Seca4g11858 649 PANTHER MALIC ENZYME-RELATED 75 648 - -
Seca4g11858 649 MobiDBLite consensus disorder prediction 15 46 - -
Seca4g11858 649 PIRSF ME 79 649 IPR001891 GO:0004470|GO:0004471
Seca4g11858 649 ProSitePatterns Malic enzymes signature. 361 377 IPR015884 GO:0004471
Seca4g11858 649 PRINTS Malic enzyme signature 276 298 IPR001891 GO:0004470|GO:0004471
Seca4g11858 649 PRINTS Malic enzyme signature 495 511 IPR001891 GO:0004470|GO:0004471
Seca4g11858 649 PRINTS Malic enzyme signature 240 269 IPR001891 GO:0004470|GO:0004471
Seca4g11858 649 PRINTS Malic enzyme signature 336 354 IPR001891 GO:0004470|GO:0004471
Seca4g11858 649 PRINTS Malic enzyme signature 361 377 IPR001891 GO:0004470|GO:0004471
Seca4g11858 649 PRINTS Malic enzyme signature 180 204 IPR001891 GO:0004470|GO:0004471
Seca4g11858 649 PRINTS Malic enzyme signature 392 408 IPR001891 GO:0004470|GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11858 Seca-Chr4 259229941 259235614 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11858 K00029 - gmx:100800844 1078.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08708 4 207391858 207397887 Seca4g11858 4 259229941 259235614 ECH
Seca12g06721 12 159276606 159281482 Seca4g11858 4 259229941 259235614 ECH
Seca4g00686 4 11447054 11451477 Seca4g11858 4 259229941 259235614 ECH
Seca4g11858 4 259229941 259235614 Seca4g11858 4 259229941 259235614 ECH
Seca4g11858 4 259229941 259235614 Seca4g00686 4 11447054 11451477 ECH
Seca4g11858 4 259229941 259235614 Seca4g08708 4 207391858 207397887 PCT