Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11857 ATGAACAGAGCAAAATGGATATGTGAATGGTATAAAGTGAGTAGTGACTCGGTGAGTGAGTTGGGTGGCGGCATGACTCGGCGGTGCTCTCTGTGCAGCAACAATGGGCACAACTCGAGAACATGCCCCTCTCGTAGCGTCAAGCTTTTCGGTGTGAGAATGAGTCTCACCGATGGATCCTTCATCAAGAAGAGCGCCAGCATGAGCAACCTCTCCTCTTCCTCCACCACCGCCACCGCCGCTTCCCCTTCCTCCGACGGCTACTCCTCCGATCACCCTTCCCTCCCCTCCTCTTCCCGTCAGAAAAAGAAAGGCGTTCCATGGACTGAAGAGGAACATCGCATGTTCTTAATTGGTCTTCAAAAACTGGGAAAAGGAGACTGGCGTGGAATAGCAAGTAATTTTGTTGTGTCAAGGACCCCCACTCAAGTAGCAAGTCATGCCCAGAAATACTTCATACGACAGAGTAATGCCACCAGGAGAAAGAGACGTTCTAGTCTTTTTGACTTACCTCCGGATATGGTTGTTTCAAATCCACCTTCCATGCCAGAAGTACTACTGCCACCTTCTGAGAACTCACAGCCTACTAATGCAGAATCACAGCCTTCATTAAATCTCTCCCTCAAGTCAGAATTTGAACCCATGGAAACTACTCAAGAAAATGTGGAAGAGCCCAATGAAACTATGATGGCATCCAATGGAATGACACCAGTGCCTCCTGGATTCTTCTCAACTTATTTACCTCTCCCATTTTCCATGTGGCCATCAAATGCAGCTTCCTGTGAAGGAGTTAACGGAGCTGAAACATCTTATCATCAGGTCCTCAAACCAATCCCAGTCATTCCCAAGGAACCTGTCAATGTTGATGAATTTGTGGGAATTTCTCAGCTGAGTATTGGTGAAACTGGCGAAACACGGGTGCGTGATAAGGAGCCTTCCCCACTCTCTTTAAAGTTGTTAGGAGAGCCCTCAAGGCAGTCAGCTTTTCATGCAAAAACCCCAGTTGGAGATTCTGATTTAAACAATGGCAAGAACAATGTGATTCAAGCGGGTTGA 1056 0.4735 MNRAKWICEWYKVSSDSVSELGGGMTRRCSLCSNNGHNSRTCPSRSVKLFGVRMSLTDGSFIKKSASMSNLSSSSTTATAASPSSDGYSSDHPSLPSSSRQKKKGVPWTEEEHRMFLIGLQKLGKGDWRGIASNFVVSRTPTQVASHAQKYFIRQSNATRRKRRSSLFDLPPDMVVSNPPSMPEVLLPPSENSQPTNAESQPSLNLSLKSEFEPMETTQENVEEPNETMMASNGMTPVPPGFFSTYLPLPFSMWPSNAASCEGVNGAETSYHQVLKPIPVIPKEPVNVDEFVGISQLSIGETGETRVRDKEPSPLSLKLLGEPSRQSAFHAKTPVGDSDLNNGKNNVIQAG. 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11857 351 ProSiteProfiles Myb-like domain profile. 100 152 IPR001005 -
Seca4g11857 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 156 IPR017930 -
Seca4g11857 351 SMART sant 104 154 IPR001005 -
Seca4g11857 351 MobiDBLite consensus disorder prediction 303 351 - -
Seca4g11857 351 FunFam transcription factor MYB1R1 106 157 - -
Seca4g11857 351 NCBIfam myb-like DNA-binding domain, SHAQKYF class 103 155 IPR006447 GO:0003677
Seca4g11857 351 MobiDBLite consensus disorder prediction 72 107 - -
Seca4g11857 351 CDD SANT 107 152 IPR001005 -
Seca4g11857 351 MobiDBLite consensus disorder prediction 169 203 - -
Seca4g11857 351 Pfam Myb-like DNA-binding domain 107 152 IPR001005 -
Seca4g11857 351 PANTHER TRANSCRIPTION FACTOR KUA1 27 237 - -
Seca4g11857 351 MobiDBLite consensus disorder prediction 72 103 - -
Seca4g11857 351 MobiDBLite consensus disorder prediction 187 203 - -
Seca4g11857 351 Gene3D - 108 157 - -
Seca4g11857 351 ProSiteProfiles SANT domain profile. 108 156 IPR017884 -
Seca4g11857 351 SUPERFAMILY Homeodomain-like 101 157 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11857 Seca-Chr4 259225399 259227636 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca4g11857 Myb_DNA-binding 3.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11857 - - gmx:778036 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11857 4 259225399 259227636 Seca4g11857 4 259225399 259227636 ECH