Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11852 ATGATTGTTGTACGAAAACCCCACTGGGAGTTGCTTCACTTTCTCCTCTTTCTGCTTTACCTTAACTGCGACAGAACCAGTTCTTACCCGATGGCACCTATGAACTGTACGGACACGAGCCGGGTTTGCACTTCTTTCTTGGCTTTTAAGCCTCAACCGAACCAGACATTGGCGGTGATACAGAGCATGTTTGATGTGTTGCCTGGTGACATCACCGTTGAAGGCAATGACTGGAATTACATATTCATCAGGAAGAACTGTTCTTGTGCTGCTGGTATCAAGAAATATGTGTCTAACACCACCTTCACTGTGAAATCCAATAATGGGTTGGTGTATGATTTGGTGATGGATGCTTATGATGGACTTGCTTTCCTTCCCAACACCACTCGGAGGGCAAAGAATGGTGCTGTTATATCACTGAGGTTGTTCTGTGGCTGCTCTAGTGGACTGTGGAACTATCTGATGAGTTATGTTATAAGAGATGGGGATAGTGTTGAATCGTTGGCAAGCCGATTTGGGGTTAGTATGGATAGTATTGAGAGTGTAAATGGCATCGATGATCCTGATAATGTCACTGTGGGTTCACTTTATTATATTCCTCTGGATTCGGTTCCTGGTGATCCTTATCCCCTGAACAATGCTTCTCCACCAGCTCCTGTTCCTGCCCCATCTGTTGATAATTTTTCAGGTTTTGTTACAGGTGATCAAGTCAATCATAAGGCTCATGTACCCTATGGATGGATCTTTGGGGGTTTAGGAGTTGGTCTTTTTCTGATACTATTAAGCGTAATTCTTTGTGTTTGCCTGAGATCATCAAATTGTTTTGCTGAAGTTAGAAATCATGAAAAAGGTGCTGAGGGCAAGATCTCTCATAAATTCCATATTCTTCGTAACCCAAGTTTTTTTTGTGGTTCCGGAAGATACATATGTGGCAAACATGTTGACCAGAAGCAAACAGATGGTGAATCCAGCAATCACACGATTACCATTCCCAAAGTTTCAACTCTGGGGCCTGAAGTATTTGATATGGATAAGCCTGTGGTTTTTACATATGAAGAGATTTTTTCCTCGACTGATGGTTTCTCTGATTCAAATCTACTTGGGCATGGAACATATGGGTCTGTTTACTATAGCCTTCTGCGTGACCAGGAAGTTGCAATTAAAAGAATGACAGCTACAAAAACAAAAGAATTTATGTCAGAGATGAAAGTTCTGTGCAAGGTTCATCATGCTAATCTGGTAGAATTGATTGGCTATGCAGCTAGTCATGATGAGCTTTTCCTAGTTTATGAATATGCTCAGAAGGGTTCGCTCAGAAGCCATTTGTATGATCCTCAAAATAAGGGCCATTCCTCACTTTCTTGGATCATGAGGGTCCAGATTGCACTTGATGCTGCTAGGGGCCTTGAATATATACATGAACACACAAAAACTCACTATGTCCATCGTGATATCAAGACAAGCAACATTTTACTTGATGCTTCCTTTAGAGCAAAGATTTCAGATTTTGGATTAGCAAAACTTGTTGGGAAAACAAATGAGGGAGAAATTTCAACTACCAAAGTAGTTGGTACATATGGATATTTAGCTCCAGAATACTTGAGTGATGGCCTTGCAACAACCAAAAGTGATGTCTATGCATTTGGTGTTGTGCTTTTTGAGATTATATCAGGAAAGGAGGCCATTATTCGAACAGAAGGCACAATGACAAAAAATCCTGAAAGACGTTCACTGGCATCAATAATGTTGGCAGTTCTTAGGAACACACCTGATTCTATGAGCATGTCAAGCATGAGAGATTATATTGATCCAAATATGATGAATCTATATCCCCATGATTGTGTATTCAAGATGGCCATGCTGGCAAAGCAATGTGTGGATGATGATCCCATCTTACGACCTGATATGAAACAAGTTGTGATATCCCTCTCACAGATTCTCCTGTCTTCTGTTGAGTGGGAAGCAACTCTAGCTGGGAATAGCCAGGTATTCAGTGGCCTTGTTCAGGGAAGATAG 2016 0.4122 MIVVRKPHWELLHFLLFLLYLNCDRTSSYPMAPMNCTDTSRVCTSFLAFKPQPNQTLAVIQSMFDVLPGDITVEGNDWNYIFIRKNCSCAAGIKKYVSNTTFTVKSNNGLVYDLVMDAYDGLAFLPNTTRRAKNGAVISLRLFCGCSSGLWNYLMSYVIRDGDSVESLASRFGVSMDSIESVNGIDDPDNVTVGSLYYIPLDSVPGDPYPLNNASPPAPVPAPSVDNFSGFVTGDQVNHKAHVPYGWIFGGLGVGLFLILLSVILCVCLRSSNCFAEVRNHEKGAEGKISHKFHILRNPSFFCGSGRYICGKHVDQKQTDGESSNHTITIPKVSTLGPEVFDMDKPVVFTYEEIFSSTDGFSDSNLLGHGTYGSVYYSLLRDQEVAIKRMTATKTKEFMSEMKVLCKVHHANLVELIGYAASHDELFLVYEYAQKGSLRSHLYDPQNKGHSSLSWIMRVQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDASFRAKISDFGLAKLVGKTNEGEISTTKVVGTYGYLAPEYLSDGLATTKSDVYAFGVVLFEIISGKEAIIRTEGTMTKNPERRSLASIMLAVLRNTPDSMSMSSMRDYIDPNMMNLYPHDCVFKMAMLAKQCVDDDPILRPDMKQVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR. 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11852 671 FunFam Kinase family protein 336 432 - -
Seca4g11852 671 SMART serkin_6 361 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11852 671 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 49 665 IPR044812 GO:0019199|GO:0045087
Seca4g11852 671 Gene3D Phosphorylase Kinase; domain 1 336 432 - -
Seca4g11852 671 ProSitePatterns Protein kinases ATP-binding region signature. 367 388 IPR017441 GO:0005524
Seca4g11852 671 Gene3D Transferase(Phosphotransferase) domain 1 434 658 - -
Seca4g11852 671 ProSiteProfiles Protein kinase domain profile. 361 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11852 671 Pfam Protein tyrosine and serine/threonine kinase 365 641 IPR001245 GO:0004672|GO:0006468
Seca4g11852 671 Gene3D LysM domain 152 205 IPR036779 -
Seca4g11852 671 FunFam PTI1-like tyrosine-protein kinase 3 433 657 - -
Seca4g11852 671 SMART LysM_2 156 200 IPR018392 -
Seca4g11852 671 ProSiteProfiles LysM domain profile. 155 199 IPR018392 -
Seca4g11852 671 SUPERFAMILY Protein kinase-like (PK-like) 339 643 IPR011009 -
Seca4g11852 671 SUPERFAMILY LysM domain 155 200 IPR036779 -
Seca4g11852 671 Pfam LysM domain 157 194 IPR018392 -
Seca4g11852 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 480 492 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11852 Seca-Chr4 259188499 259196796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11852 33 671 Receptor kinase-like Gene Family AT1G51940 69.984 0.0 873
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca4g11852 PK_Tyr_Ser-Thr 2.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11852 - - gmx:100796989 1158.67