Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11851 ATGTGGCAGAGAAGCCACGAGTCTTCTGAGGAGAGGAAACTGGAGCTTAGACTTGGTCCACCTGGTGAAGAGTCTTCTCTCAATGAAGACATGAAAAACGTCAAGAGAGAAAGAGATGAATCACCACTCACTCTTGGTTGCTTTTCAACTCAGAAAATTTCTACCTCCACTTGCTATCACCAGCATAATCCTCAGCAGGCTAAAGCTAAAGTTTCATCCTTTCTTCAACTCCAATCAAGCCCACAGAACATGCCAAGGATGGGAGAGAAGAATGCATTCTCACCCTCTTCTGCAAATTCAGATGTACCTAACAAGTCTCAAAAAAGAAATGCTTCTGGTCCAGTAGTGGGTTGGCCTCCAATTCGTTCATCCAGGAAGAATCTTGCAAGTGGAAGCTCTTCTAAGTCACCTTCTGGGTCCCAGCAACATCAACATGTGGTTCCAGACAAGGTTGCAAGCAGCAACAAACCTATTGGGAACTCTGGTGGTAAAGGGTTGTTTGTGAAGATCAATATGGATGGAGTTCCCATTGGTAGAAAAGTGGACATCAATGCTTACAACAGCTATGAAAAACTTTCCTCTGCTGTTGATGAGCTCTTTAGAGGTCTCCTTTCAGAAATAAATTTATCTCATGTTGTGTTTTCCCACTGCTGTTCTGCTGAAAGAGATTCCTCTGCTGGTGGAATTCACAACAAGGAAGAGGAAGAGAAAACCATCACGGGTTTATTGATTGGAAGCGGGGAATATACTCTTGTTTATGAAGATAATGAAGGAGACAAGATGCTTGTTGGGGATGTGCCGTGGCAGTAA 810 0.4346 MWQRSHESSEERKLELRLGPPGEESSLNEDMKNVKRERDESPLTLGCFSTQKISTSTCYHQHNPQQAKAKVSSFLQLQSSPQNMPRMGEKNAFSPSSANSDVPNKSQKRNASGPVVGWPPIRSSRKNLASGSSSKSPSGSQQHQHVVPDKVASSNKPIGNSGGKGLFVKINMDGVPIGRKVDINAYNSYEKLSSAVDELFRGLLSEINLSHVVFSHCCSAERDSSAGGIHNKEEEEKTITGLLIGSGEYTLVYEDNEGDKMLVGDVPWQ. 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11851 269 MobiDBLite consensus disorder prediction 125 158 - -
Seca4g11851 269 MobiDBLite consensus disorder prediction 1 43 - -
Seca4g11851 269 Pfam AUX/IAA family 14 269 IPR033389 -
Seca4g11851 269 ProSiteProfiles PB1 domain profile. 165 269 IPR000270 GO:0005515
Seca4g11851 269 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 268 IPR003311 GO:0005634|GO:0006355
Seca4g11851 269 Gene3D - 160 269 - -
Seca4g11851 269 MobiDBLite consensus disorder prediction 80 111 - -
Seca4g11851 269 SUPERFAMILY CAD & PB1 domains 157 269 - -
Seca4g11851 269 MobiDBLite consensus disorder prediction 28 42 - -
Seca4g11851 269 MobiDBLite consensus disorder prediction 1 19 - -
Seca4g11851 269 MobiDBLite consensus disorder prediction 80 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11851 Seca-Chr4 259173236 259175959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11851 169 268 B3 DNA Binding Superfamily AT4G23980 30.000 9.27e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca4g11851 AUX_IAA 2.6e-55 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11851 K14484 - gmx:100793822 339.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08722 4 207736260 207740676 Seca4g11851 4 259173236 259175959 ECH
Seca4g11851 4 259173236 259175959 Seca4g11851 4 259173236 259175959 ECH
Seca4g11851 4 259173236 259175959 Seca4g08722 4 207736260 207740676 PCT