Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11832 ATGGCGACGCCGGGAGCAATGTTGGAGGGAGGAGCACCGCAACCTCCGGGGACGGACATGACCGGAATATGCTTCAGAGACCAGCTGTGGCTCAACACATACCCTCTCGATCGCAATCTTGTCTTTGATTACTTCGCCTTATCCCCTTTCTACGATTGGACCTCCAACAATGAGCAACTCCGAATGCGCTCTCTCCACCCCCTCGACCTCTCTCAACTATCGAAAATGACAGGCACTGAGTATGTGCTCAGTGAAGTTATGGAGCCCCACCTGTTTGTTATTCGCAAGCAAAAGAGGGATAGCCCTGACAAAGTTACACCCATGCTTGCTTATTACGTCTTGGATGGTTCAATATACCAGGCTCCACAACTATGCAATGTTTTTGCTGCTCGAATTGGAAGGGCACTCTATTATATACAAAAGGCCTTTACTACAGCTGCCTCAAAGTTGGAGAAGATAGGATACGTTGATTCTGAAAATGAGACTGCATTGCTGGAGTCGAAGGTTGGTAAGGAGACAATTGATGTGAAGGAAGTTAAGCGAGTGGATCATATTCTTGCATCCTTGCAACGCAAGGTAAGTTGTAGAAACACAACTTTCCCATGTTTCCTTATCAAACAATTATTTAGCACACTAATTACAAGTTTCTAA 651 0.4562 MATPGAMLEGGAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTSNNEQLRMRSLHPLDLSQLSKMTGTEYVLSEVMEPHLFVIRKQKRDSPDKVTPMLAYYVLDGSIYQAPQLCNVFAARIGRALYYIQKAFTTAASKLEKIGYVDSENETALLESKVGKETIDVKEVKRVDHILASLQRKVSCRNTTFPCFLIKQLFSTLITSF. 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11832 216 FunFam Mediator of RNA polymerase II transcription subunit 6 17 146 - -
Seca4g11832 216 PANTHER MED-6-RELATED 3 194 IPR007018 GO:0003712|GO:0006357|GO:0016592
Seca4g11832 216 Gene3D Mediator complex, subunit Med6 17 146 IPR038566 -
Seca4g11832 216 Pfam MED6 mediator sub complex component 23 148 IPR007018 GO:0003712|GO:0006357|GO:0016592
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11832 Seca-Chr4 258919065 258922578 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED6 Seca4g11832 Med6 2.7e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11832 K15128 - gmx:100792248 353.984