Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11825 ATGACATTCAGTGAGATCATATACACCCCATCACAAAATTATATTCATCCATGTCTGGTTAACACAGGCACAGGGACTCCATTCATTTCAGCTATAGAATTGAGGATTTTGGACAAAAGTACTTACTCAGCTATAACATTGGAACAATTTGGACGGTACGATTTAGGTTCAAGCCCCGACATAGAATACAGATACAAAGATGATGTTTATGACCGCATCTGGAAGAATCTTGCATTTAATCAGTGGACACAAGTAAATACCACATTAAGCCCAGATGATCTAGCTCAGAATGAGTATAAACCACCAGCAGTTGTCATGAGCACGGCTGCTACACCAATAAATGCCAGTGCTCCTTTTCAGTTCTATTGGGAATCAGATAATGTAAATGACCAGTACTACATCTACATGCACTTCAATGAGGTTGAAAAGCTCGCAGCAAATGAATCAAGAGAATTTGATATCTACATGAATGGCAGTCATTTTTATGGACCTCTGGTACCTTCATACCAATCAACAACTACCATATTTATTGATGCTATCACAAACATCAAGAAAGGCTATGGAGTGGCTAGAAATTGGCAAGGAGATCCATGTGCCCCTGTAGCATACATGTGGGAAGGCCTAAACTGTAGTTTTGATGGAAATAACCCCCCAAGAATTACATCCTTGAATTTGTCTTCAAGTGGACTTACTGGACAAATAGCATCTTCCATCTCCAAGCTCACTATGTTACAGTACTTGGATTTATCAAACAATAGCTTAAGTGGTCCCGTACCTGATTTTCTGACACAACTTCACTCACTAAAAGTGTTAAACTTGGGGAAGAACAACCTTACAGGTTTAGTTCCCAATGGACTCGTTGACAGATCAAAAAAAGGTTCACTATCATTGAGCATTGACCAAAATCCAAATCTATGTGAATCTACTTCATGCAACCAACAAACAGACGATCAGGAGAAGAAGAAGAATAATAATATAGTTATTCCCGTAGTAGCATCAATTGCTGGGATTCTGGTGCTCCTAGTAATCGTACCAACAACTATCATCTATCGCCGTAAAAAAAGAAAACCACAAGCTGTGAACAGTCGAGTGGAGCCCAAGACTCCAAATGAGTCACAATTAGAATCCAAGCAAATTAGGCAATATACGTTCAATGATCTTACAAAGATCACAAACAACTTTGATAGAGTTCTTGGTAAAGGTGGATTTGGAACAGTTTATCATGGCCTTATTGATGACACCCAAGTAGCTGTCAAGATGCTTTCTCCATCAGCTGTACAAGGATATCAACAATTTTTAGCAGAGGTTAAACTTCTGATGAGAGTTCATCACAAAAATCTGACTTCTCTTATTGGTTATTGTAATGAAAATAACAATAAAGGGCTCATCTATGAATACATGGCAAGTGGAAACCTGGCTGATCACATTTCAGAAAAAAATAGCAGGGCAAAGTTCTTCAATTGGGAAGATAGACTCCGAATAGCAGTGGATGCAGCCCAAGGACTGGAATATCTGCATAATGGTTGCAAGCCACCTATAATCCACAGAGATGTGAAAACAACAAATATTTTGTTAAATGAAAACTTCCAAGCAAAATTGGCCGATTTTGGGCTATCCAAAACCTTTCCCACTGATGGAGGCACGCATTTGTCCACTATTGTTGCTGGAACTCCTGGTTACCTTGATCCTGATTATGGCATATCAAGCAGGTTGACAGAGAAAAGTGATGTTTACAGCTTTGGAGTTGTTCTTTTGGAGATAATCACAAGTCAACCAGCTATATCAAAAACACCAGAGAAGACTCACATAAGTGAGTGGGTTAGATCCATGGTTTCTAATGGAGATATTAAAAATATTGTTGACTCAAGATTACATGAAGATTTTGAGACTAGCTCTGCCTGGAAAGCTGTTGAAATAGGAATGGCTTCTGTGTCCATCAATCCTGCCAGAAGGCCAAACATGAGTGATGTTGTGAACGAGTTAAAGGAGTGTTTGGCTACCGAGTTAGCTAGAAAAAGGGCTGGCCGTGACACTGAAAACAACGATTCAATTGAGTTGGTATCCTTATTGACAACTGAAGTCGGTCCCCTGGCTAGGTAG 2100 0.3948 MTFSEIIYTPSQNYIHPCLVNTGTGTPFISAIELRILDKSTYSAITLEQFGRYDLGSSPDIEYRYKDDVYDRIWKNLAFNQWTQVNTTLSPDDLAQNEYKPPAVVMSTAATPINASAPFQFYWESDNVNDQYYIYMHFNEVEKLAANESREFDIYMNGSHFYGPLVPSYQSTTTIFIDAITNIKKGYGVARNWQGDPCAPVAYMWEGLNCSFDGNNPPRITSLNLSSSGLTGQIASSISKLTMLQYLDLSNNSLSGPVPDFLTQLHSLKVLNLGKNNLTGLVPNGLVDRSKKGSLSLSIDQNPNLCESTSCNQQTDDQEKKKNNNIVIPVVASIAGILVLLVIVPTTIIYRRKKRKPQAVNSRVEPKTPNESQLESKQIRQYTFNDLTKITNNFDRVLGKGGFGTVYHGLIDDTQVAVKMLSPSAVQGYQQFLAEVKLLMRVHHKNLTSLIGYCNENNNKGLIYEYMASGNLADHISEKNSRAKFFNWEDRLRIAVDAAQGLEYLHNGCKPPIIHRDVKTTNILLNENFQAKLADFGLSKTFPTDGGTHLSTIVAGTPGYLDPDYGISSRLTEKSDVYSFGVVLLEIITSQPAISKTPEKTHISEWVRSMVSNGDIKNIVDSRLHEDFETSSAWKAVEIGMASVSINPARRPNMSDVVNELKECLATELARKRAGRDTENNDSIELVSLLTTEVGPLAR. 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11825 699 SUPERFAMILY L domain-like 177 291 - -
Seca4g11825 699 Gene3D Ribonuclease Inhibitor 173 304 IPR032675 -
Seca4g11825 699 SMART serkin_6 392 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11825 699 ProSiteProfiles Protein kinase domain profile. 392 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11825 699 MobiDBLite consensus disorder prediction 355 375 - -
Seca4g11825 699 SUPERFAMILY Protein kinase-like (PK-like) 371 661 IPR011009 -
Seca4g11825 699 Pfam Leucine rich repeat 218 278 IPR001611 GO:0005515
Seca4g11825 699 PRINTS Leucine-rich repeat signature 244 257 - -
Seca4g11825 699 PRINTS Leucine-rich repeat signature 265 278 - -
Seca4g11825 699 FunFam Leucine-rich repeat receptor-like kinase 173 308 - -
Seca4g11825 699 PANTHER OS07G0107800 PROTEIN-RELATED 173 665 - -
Seca4g11825 699 Gene3D Transferase(Phosphotransferase) domain 1 467 686 - -
Seca4g11825 699 Pfam Protein tyrosine and serine/threonine kinase 394 661 IPR001245 GO:0004672|GO:0006468
Seca4g11825 699 FunFam Leucine-rich repeat receptor-like protein kinase 370 466 - -
Seca4g11825 699 Pfam Malectin-like domain 2 183 IPR024788 -
Seca4g11825 699 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 467 674 - -
Seca4g11825 699 Gene3D Phosphorylase Kinase; domain 1 364 466 - -
Seca4g11825 699 CDD STKc_IRAK 398 663 - -
Seca4g11825 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672|GO:0006468
Seca4g11825 699 ProSitePatterns Protein kinases ATP-binding region signature. 398 419 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11825 Seca-Chr4 258826296 258829913 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11825 5 699 Receptor kinase-like Gene Family AT1G51800 45.971 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Seca4g11825 PK_Tyr_Ser-Thr 5.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11825 - - gmx:100779474 1011.13