Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11820 ATGGCTGCAAGCTTTGCTTCCAGATGTTCTCGTGTGGGCCGCTCTCTGTTCAGTGGATTAAGCAACAGCTCCCCGGGTTTATTTACCACATCACATGAGATGACATGCAACAGTTATTTTTCTCAGCAGAAACGCACTTTCATACAGATGAGGACTGTTCTCAAGGTTGTGGACAATTCTGGGGCTAAAAAGGTGATGTGCATACAGGCATTGAAGGGGAAGAAAGGGGCTAGATTAGGTGACACAATAGTAGCATCAGTGAAGGAAGCCCATCCTAATGGAAAAGTGAAGAAAGGAAAGGTTGTATATGGGGTAGTTGTGCGCGCAGCAATGCAAAAGGGAAGATGTGATGGCAGTGAGGTCAAGTTTGATGACAATGCTGTGGTGCTTGTTGACAAGCAAGGCCAGCCTATTGGGACCAGAGTTTTTGGGCCAGTGCCTCATGAGCTGAGGCAGAAGAAGCATGTCAAGATTCTTACCTTGGCAGGGCATATTGCATAG 501 0.4691 MAASFASRCSRVGRSLFSGLSNSSPGLFTTSHEMTCNSYFSQQKRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA. 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11820 166 FunFam 50S ribosomal protein HLP, mitochondrial-like 47 166 - -
Seca4g11820 166 Gene3D Ribosomal protein L14 47 166 IPR036853 GO:0003735|GO:0005840|GO:0006412
Seca4g11820 166 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 48 165 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca4g11820 166 SMART Ribosomal_L14_2 47 166 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca4g11820 166 Pfam Ribosomal protein L14p/L23e 48 165 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca4g11820 166 ProSitePatterns Ribosomal protein L14 signature. 104 130 IPR019972 -
Seca4g11820 166 Hamap 50S ribosomal protein L14 [rplN]. 47 166 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca4g11820 166 SUPERFAMILY Ribosomal protein L14 48 165 IPR036853 GO:0003735|GO:0005840|GO:0006412
Seca4g11820 166 NCBIfam 50S ribosomal protein L14 48 165 IPR005745 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11820 Seca-Chr4 258752932 258757112 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11820 58 149 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 36.364 3.70e-09 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11820 K02874 - gmx:100818301 297.36