Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11815 CATGTACCTTTTGTTCTTCCTACCTATACAAGGTTCTCCACAACAAACACACACGGCATCACTTCTGGTCTTCAACGGCAGCTCAAGATCTCTATAGTTTCATTTCATCAGAAATTACAACCATCCATGGATGGTCTGAATTGGGGTATGAACACATCACAAATCCTGTGGAGTACTCAGCAGCAACAAGATTTTGATGGAGGCTACCCCATATCCAACTTAAGTGCAAGTGTTCTTAATCAAATACAAGAGATGCAGAAAGCTCAAACAGGTCATACACATTCAAATTCTGAAAGGGTGATTTATCAGTCAGCAGTTACTACCACCAGTTCAGAGATAATAGATGTGATGGCCAACACCAACACAAACCTGTCAGCAATGGTGACAGTGAAATCACTCTCAGGAGCTGGAGCCAGCTGGGGAGAAGCTTTAACTTCTCAATCATGTCCGTCCCTTTCAGTCAATGGACCTTACAGTATGAACCCAATTAGGAACTACATGCCAGATTTCAACATGGCCCACCAACAACAACTTATCAATGGCTCACAAAATGGGAAAGGGACCGGTTCTCATGACTCTTTTGATTGTTTGCTTTCAGCTACTAATAGCAACACAGACACTTCTGTGGAAGATGATGGGATTTCAATGATTTTATCTGACTGTGGAAACTTATGGAACTTCAGTTATGGCAGTGCAGCTTCCTCTGCTGAATCTGAGAGCAATGCTTCCAATGCTAAAAACAAACACATGCAACGTCCAGTCAATGAACTTGATGAAACAGCAGTGTCTCAAAGCTCCTCAGATCAATATGTCAATCAAGGAAAAACAATAGAATCCAAGGCTAATTGCTCACAATCTGAGCTGATCAAAGTTGGTGTTAGTAGTGATTCATACTTCAGTAGTATTGTTCAGAATTCTTCTCCAAGTGAAGGTGGTTTCAGACTCATCTCAGATAATAATCCAACAAAATGCAAGAAACCAAGATGGGATAAGGTTCCTTCTTCATCTAACATCAATTTCCAGCAGCCAGATTCATCAATGTTGTCATCTTCCATTCATCAAGAACCTGATCCAGAGGCCATAGCACAAATGAAGGAGATGATATATAGGGCTGCAGCTTTTAGGCCTGTGAATTTGGGGTTGGAGGTGATTGAAAAGCCAAAGAGGAAGAATGTGAGGATATCATCTGATCCACAAACTGTGGCTGCAAGGCATAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTACAGAAGCTTGTGCCAGGGGGAAGCAAGATGGACACTGCATCAATGCTTGATGAGGCTGCAAACTACCTCAAGTTTCTCAGGTCACAGGTCAAGGCACTGGAAAGTCTAGGGAACAAGGTGAATGCAATGAATTGTCCTCCTACTAGCATTGCTTTCTCTTTCAACCCTTCTTTTCCCATGCAAAATCCATCACTCCCAGGGTTGAAGTGA 1461 0.4223 HVPFVLPTYTRFSTTNTHGITSGLQRQLKISIVSFHQKLQPSMDGLNWGMNTSQILWSTQQQQDFDGGYPISNLSASVLNQIQEMQKAQTGHTHSNSERVIYQSAVTTTSSEIIDVMANTNTNLSAMVTVKSLSGAGASWGEALTSQSCPSLSVNGPYSMNPIRNYMPDFNMAHQQQLINGSQNGKGTGSHDSFDCLLSATNSNTDTSVEDDGISMILSDCGNLWNFSYGSAASSAESESNASNAKNKHMQRPVNELDETAVSQSSSDQYVNQGKTIESKANCSQSELIKVGVSSDSYFSSIVQNSSPSEGGFRLISDNNPTKCKKPRWDKVPSSSNINFQQPDSSMLSSSIHQEPDPEAIAQMKEMIYRAAAFRPVNLGLEVIEKPKRKNVRISSDPQTVAARHRRERISERIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGNKVNAMNCPPTSIAFSFNPSFPMQNPSLPGLK. 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11815 486 Coils Coil 433 453 - -
Seca4g11815 486 FunFam BHLH transcription factor 397 461 - -
Seca4g11815 486 SMART finulus 400 449 IPR011598 GO:0046983
Seca4g11815 486 Gene3D - 399 462 IPR036638 GO:0046983
Seca4g11815 486 MobiDBLite consensus disorder prediction 332 352 - -
Seca4g11815 486 MobiDBLite consensus disorder prediction 310 352 - -
Seca4g11815 486 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 394 443 IPR011598 GO:0046983
Seca4g11815 486 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 201 474 IPR045843 GO:0003700|GO:0006355
Seca4g11815 486 Pfam Helix-loop-helix DNA-binding domain 404 443 IPR011598 GO:0046983
Seca4g11815 486 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 400 458 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11815 Seca-Chr4 258702369 258704380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11815 135 480 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.899 1.24e-85 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g11815 HLH 3.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11815 - - vra:106773034 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11815 4 258702369 258704380 Seca4g11815 4 258702369 258704380 ECH
Seca4g11815 4 258702369 258704380 Seca4g08744 4 208226487 208227809 PCT