Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11805 ATGGCGACAGTACCAGGTCAGCTCGTGTGGGAGATCGTGAAGAAGAACAACTCATTTTTGGTGAAAGAGTTTGGAAGAGGCACTCAGAGTGTTGAATTCAGCAAAGAGAGCAACAATCTCTATAATCTCAACTCTTTCAAGTACTCTGGTTTGGCAAACAAGAAAACTGTTACCATTCAGCCTGTGGGTAAAGATCTGTCTGTGTTGTTGGCTACAACCAAGACAAAGAAACAAAACAAGCCTTCTGCTTTGCTTCACAAATCGGTCATGAAGAAGGAGTTCAGGAGGATGGCAAAGGCTGTCCAAAATCAGCAGGTGGCAGATAATTACTACAGGCCTGATCTGAAGAAAGCAGCTCTTGCAAGGTTGAGTGCCGTTAACAGAAGCCTCAAAGTTGCCAAGTCTGGTGTCAAGAAGAGGAATAGACAGGCTGTGAAGGTCCGTGGTAGGAAGTGA 456 0.4496 MATVPGQLVWEIVKKNNSFLVKEFGRGTQSVEFSKESNNLYNLNSFKYSGLANKKTVTIQPVGKDLSVLLATTKTKKQNKPSALLHKSVMKKEFRRMAKAVQNQQVADNYYRPDLKKAALARLSAVNRSLKVAKSGVKKRNRQAVKVRGRK. 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11805 151 PANTHER 60S RIBOSOMAL PROTEIN L28 1 151 IPR002672 GO:0003735|GO:0005840|GO:0006412
Seca4g11805 151 FunFam 60S ribosomal protein L28 5 134 - -
Seca4g11805 151 Pfam Ribosomal L28e protein family 8 129 IPR029004 -
Seca4g11805 151 Gene3D - 6 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11805 Seca-Chr4 258607899 258610474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11805 1 144 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 72.917 4.87e-74 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11805 K02903 - gmx:100500189 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08754 4 208431363 208434697 Seca4g11805 4 258607899 258610474 ECH
Seca4g11805 4 258607899 258610474 Seca4g11805 4 258607899 258610474 ECH
Seca4g11805 4 258607899 258610474 Seca4g08754 4 208431363 208434697 PCT