Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11794 ATGCAAGACCCAACAGCATTCCAACCCATGAAGCCCCACTTTCCTGAACAAGAACAACTCAAATGCCCACGTTGTGATTCCACAAACACCAAATTCTGCTACTACAACAACTACAACCTCTCACAGCCACGCCATTTTTGCAAGAACTGCAGAAGGTATTGGACAAAAGGTGGTGCTCTGAGAAACATCCCTGTTGGAGGTGGAAGCAGAAAGAGCACTAAACGTTCATCAAGCTCCAAACGTTCCACATCATCTTCCTCATCACCATCAATCTCCTCTGCAGCCCCAGCTACAGAGGCTGACCCGACCCGGGTTTACACTGGCCCGGTTGATCAAGACCAACAACAGGTGCTAAACACTGGTGGGAGTTTCAGTTCCCTTTTGGCATCAACTAGGCATTTTGGGAGCCTCTTTGAGGGTATGAATTCAAGTGGGTCAAGTCTAAAAATGGTGCAAATGGGTGAATTTGGGGAGAACATGAGAAGTTATGACCCGGTTGTGAATTCGGATTCGGGTAGTAACCCGGGAGTGGAGATGCAGAGTAATGGTAGCTCAGAGAGCTTACTGGGTATGCAAAATGGTGATTCAAGCTGCTGGAATGGTAGTAGCCATGGTTGGTCTGATCTTGCAATATACACACCCAGCTCAGGCTTTCAGTAG 660 0.4773 MQDPTAFQPMKPHFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKSTKRSSSSKRSTSSSSSPSISSAAPATEADPTRVYTGPVDQDQQQVLNTGGSFSSLLASTRHFGSLFEGMNSSGSSLKMVQMGEFGENMRSYDPVVNSDSGSNPGVEMQSNGSSESLLGMQNGDSSCWNGSSHGWSDLAIYTPSSGFQ. 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11794 219 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 181 IPR045174 GO:0003700|GO:0006355
Seca4g11794 219 MobiDBLite consensus disorder prediction 61 107 - -
Seca4g11794 219 MobiDBLite consensus disorder prediction 168 194 - -
Seca4g11794 219 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Seca4g11794 219 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Seca4g11794 219 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Seca4g11794 219 MobiDBLite consensus disorder prediction 69 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11794 Seca-Chr4 258470824 258471483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11794 11 138 C2C2-Dof Transcription Factor Family AT1G51700 58.865 1.02e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca4g11794 zf-Dof 2.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11794 - - gmx:100798927 291.582