Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11790 ATGGCCTACTTTGGGAATACAATAGGTGATTTCTCATGGATTTGTCTGAAGGATTTTGATTTCACCTCTTTCTGTTCTCAGAGGAGTGCAATAGACATCATAAATCTACTTTTTGGCTGTGTCTTCTACACGTCTTTGCTTATCAGTTCAATCAGAAGAAGTTCTACAAATGGGAGCAACAGAAAAAGCTTGGTTTTCTCAGTTGTCTCAATCTGTTGTGCTCTTATTAGCATTGTATTTTTTGTTATTGGCTTGTGGAATCTCATAGCCAAAACTGATAACTTTCAGCAGCTGAGCTGGTTAGCTTGCATTATCAGAGGATTCATTTGGATTTCTTTTACAGTTTCTTTGCTTTCTCAGAGATACAAATGGATCAAAATTTTGAACTCTGTCTGGTGGGCAGCTTCCTGTGTATTGGTTTCAGCTCTCAACATTGAAGTTCTGTTCAAAGACCATGCTATTGAAACTTTTGATATTATACAGTGGCTTGTACACTTCCTTCTTCTATTCTGTGCCTTCAAAAATCTTGGTTATTTTCTCACTCAAACTGTTCCAGAAAGTTTGTCTGAGCCACTATTAGCTCAGAAGATTGAAACTAAACAAACAGGACTAGGCCATGCTACCTTTCTCAGCAAGTTGATTTTCTCTTGGGTTAATTCTCTACTCAGTTTGGGTTACTCAAAGTCACTAGCTCTTGAAGAAATCCCTTCCCTTGTTCCTCAAGATGAAGCAGACTCAGCCTATCAAAACTTTGTGCATGCATGGGAATCCCTTGTAAGGGAGAGGAGCAAGAACAATACCAAAAACTTAGTTCTTTGGTCTGTGGTGAGATCTTACTTCAAAGAAAACATATTAATAGCATTTTACGCAATACTCAGAACCATTTCTGTTGCAGTTTCACCTCTAATACTTTATGCTTTTGTAAACTACTCTAATAGTAATAATAGCACTGGGGCAGATCTCAAAGAAGGTCTTTCCATAGTAGGTTTTCTGATTCTCACCAAAGTGGTTGAGTCTTTGTCACAGAGACATTGGTTTTTTGATTCAAGGAGGTCAGGATTGAAAATGAGATCGGCTCTTATGGTGGCAGTCTATAAAAAGCAGTTAAAGCTTTCAAACTCTGCAAGGAGAAGGCACTCAACTGGTGAAATTGTGAATTACATTGCAGTTGATGCATATCGAATGGGAGAATTTCCATGGTGGTTTCATATAACATGGACTTCTGCATTGCAACTTGTTCTGTCCATTGGTATCCTTTTTGGTGTTGTGGGTGTTGGTGCTCTTCCTGGTTTAGTCCCTCTTCTCATCTGTGGACTTCTCAATATCCCATTTGCAAAGATCCTTCAAAATTGTCAGTCACAGTTTATGATTGCACAGGATGAGCGTCTTAGAGCATTTTCAGAAATTCTAAACAGTATGAAAATCATTAAGTTACAATCCTGGGAGGATAAATTCAAGAACTTAGTTGAGTCCCTACGTGCTAAAGAGTTCATATGGTTGTCTAAGGCACAGATCATGAAAGCTACTGGATCATTTCTTTATTGGATGTCTCCTACCATAGTTTCTTCTGTCGTTTTCCTCGGTTGTGCTCTTTTCAATAGTGCCCCATTGAATGCTGAAACCATTTTCACAGTTCTTGTAACTTTGAGGAACCTGGCAGAACCTGTTCGAATGATTCCAGAGGCTCTATCTATTATGATCCAAGTTCATGTGTCCTTTGATCGTCTCAATACCTTTTTGCTTGATGAAGAGCTAACTAGTGATGATAATGGAAGAAGTATAAAGCAACGTTCAGTTAATGCTGTGGAAATTCATGCTGGCAACTTCATCTGGGATCATGAATCAGTGTCCCCAACTTTAACAAATGTGAATTTGGAAATCAGATGGGGACAGAAAATAGCAGTTTGTGGGCCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCAATACTTGGAGAGATTCCTAAAATTTTAGGAACTGTTAATGTTAGTGGAAGCCTAGCCTATGTTTCTCAAACTTCTTGGATACAGAGTGGGACAGTTCGAGATAATATACTCTTTGGGAAGCCAATGGACAAAACAAGATATGAGAATGCCATTAGAGTTTGTGCCTTGGATAAGGATTTTAATGATTTTAGCCATGGTGATCTTACAGAAATAGGTCAGCGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTCGAGCAGTCTACAATGATGCTGACATCTATCTCCTTGATGACCCTTTCAGTGCAGTTGATGCTCACACTGCTGCTATTCTTTTCAATGACTGTGTCATGACTGCTCTAAGAGAGAAAACTGTCATCCTAGTGACTCATCAAGTGGAGTTTCTTTCAGAAGTTGATACAATCTTGGTAATGGAGGGTGGAAAAGTTATTCAATCAGGTAGTTATGAGAATCTCCTAACAGCTGGGACAGCCTTTGAACAACTTGTGAGCGCCCATAAAGAAACAATTACAGAGTTGATCCAGGATAATGAAAATAAAAGAGATTCTGAAAGTGAGGTTATGGCTCATCCAGAAGAGTCTCATGGTTTTTATCTTGTTAAAAGTCAAAGTGAGGGGGAAATTTCTACCAAGGGTCAACTTGGGGTCCAGCTTACACAAGAAGAAGAGAAGGAGATTGGTGATGTGGGCTGGAAGCCATTCTGGGATTATATTTCTTTTTCCAAGGGGGCAATCATGATGTGCTTGATCATGTTAGGACAATCTGCTTTTATTGCTTTTCAGACTGCATCAACTTTTTGGCTTGCTATAGCCATTGAAATTCCAAAAGTAACTAGTGCCACCTTGATTGGAGTTTACTCATTGATTTCATTTGCTAGTGCTGCGTTTGTATATGTAAGGTCTTACTGGACTGCACATCTTGGATTAAAGGCTTCTACAGCCTTCTTCTCAAGTTTCACTACGGCTATCTTCAATGCTCCTATGTTGTTCTTTGACTCAACACCTGTAGGAAGGATTTTAACCCGAGCCTCATCAGATTTGAGTATTTTGGACTTTGATATACCTTATTCCATCACTTTTGTAGCATGTGTAGCAATTGAAATTCTGGTGACAATTTGTATAATGGCTTCAGTTACATGGCAAGTTCTCATTGTTGCTATTCCTGCAATGGTCGCATCAAAATATGTTCAGGGATATTATCAAGCCTCAGCAAGGGAACTAATAAGGATCAATGGAACCACAAAAGCTCCAGTCATGAATTTTGCAGCTGAGACATCACTTGGAGTGGTTACTGTAAGAACATTCAACATGGTAGACAGATTTTTCAGAAACTACTTAAAACTTGTGGACACAGATGCAACACTGTTCTTTCATTCTAATGTGGCTATGGAATGGTTACTTTTAAGGATTGAAGCACTTCAAAATTTGACAGTGGTCACTGCAGCATTGTTGCTTATTCTAGTTCCTCAGGGATACGTGTCCCCAGGCTTGGTGGGACTGTCTCTTTCTTATGCTTTCAACTTGACAGGAGCTCAAATATTTTGGACTCGATGGTTTTGCAACTTATCAAACTATATTATCTCAGTTGAAAGAATTAAGCAATTTATTCACACACCAGCAGAGCCTCCTGCCATTGTGGAGGATAAACGGCCTCCATCTTCATGGCCTTCCAAGGGCAGGATTGACATTCAAGCCTTAGAGATTAGGTATCGTCCAAATGCTCCATTAGTCCTTAAGGGTATCACTTGTACGTTTAAAGAAGGGAATAGAGTTGGAGTTGTAGGAAGGACTGGAAGTGGAAAAAGTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAGCCTTCAAGAGGTGATATTTTCATAGATGGGATTAACATATGCTCAATGGGTTTGAGGGATTTGAGAATGAATCTAAGCATCATCCCTCAAGAACCAACCCTGTTCAAGGGCAGCATTAGAACCAACTTGGACCCTTTAGGCCTGTACTCAGATGATGAAATATGGAAGGCTTTGGAGAAATGTCAGCTTAAGGGAACAATCAGCAATCTACCAAGTCTCTTGGACTCTTCTGTTAGTGATGAAGGTGGAAATTGGAGCTTGGGACAGCGCCAACTATTTTGTCTTGGAAGAGTACTGCTTAAGAGGAACAGAATTCTTGTTCTGGATGAAGCTACTGCCTCCATTGACTCTGCCACAGATGCCATTCTACAAAGAGTAATTAGACAAGAATTTGCAGAATGCACAGTTATAACTGTGGCTCACAGAGTTCCAACTGTAATAGACAGTGACATGGTCATGGTCCTGTCTTATGGGAAAATGGTAGAATATGATGAGCCGTCAAAGCTAATGGACACAAACTCTTCATTCTCAAAGCTGGTAGCTGAATATTGGTCCAGCTGCAGGAGGAATTCCTCTCCAAATCTTAGTATGAAGCAATAA 4419 0.3969 MAYFGNTIGDFSWICLKDFDFTSFCSQRSAIDIINLLFGCVFYTSLLISSIRRSSTNGSNRKSLVFSVVSICCALISIVFFVIGLWNLIAKTDNFQQLSWLACIIRGFIWISFTVSLLSQRYKWIKILNSVWWAASCVLVSALNIEVLFKDHAIETFDIIQWLVHFLLLFCAFKNLGYFLTQTVPESLSEPLLAQKIETKQTGLGHATFLSKLIFSWVNSLLSLGYSKSLALEEIPSLVPQDEADSAYQNFVHAWESLVRERSKNNTKNLVLWSVVRSYFKENILIAFYAILRTISVAVSPLILYAFVNYSNSNNSTGADLKEGLSIVGFLILTKVVESLSQRHWFFDSRRSGLKMRSALMVAVYKKQLKLSNSARRRHSTGEIVNYIAVDAYRMGEFPWWFHITWTSALQLVLSIGILFGVVGVGALPGLVPLLICGLLNIPFAKILQNCQSQFMIAQDERLRAFSEILNSMKIIKLQSWEDKFKNLVESLRAKEFIWLSKAQIMKATGSFLYWMSPTIVSSVVFLGCALFNSAPLNAETIFTVLVTLRNLAEPVRMIPEALSIMIQVHVSFDRLNTFLLDEELTSDDNGRSIKQRSVNAVEIHAGNFIWDHESVSPTLTNVNLEIRWGQKIAVCGPVGAGKSSLLYAILGEIPKILGTVNVSGSLAYVSQTSWIQSGTVRDNILFGKPMDKTRYENAIRVCALDKDFNDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALREKTVILVTHQVEFLSEVDTILVMEGGKVIQSGSYENLLTAGTAFEQLVSAHKETITELIQDNENKRDSESEVMAHPEESHGFYLVKSQSEGEISTKGQLGVQLTQEEEKEIGDVGWKPFWDYISFSKGAIMMCLIMLGQSAFIAFQTASTFWLAIAIEIPKVTSATLIGVYSLISFASAAFVYVRSYWTAHLGLKASTAFFSSFTTAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYSITFVACVAIEILVTICIMASVTWQVLIVAIPAMVASKYVQGYYQASARELIRINGTTKAPVMNFAAETSLGVVTVRTFNMVDRFFRNYLKLVDTDATLFFHSNVAMEWLLLRIEALQNLTVVTAALLLILVPQGYVSPGLVGLSLSYAFNLTGAQIFWTRWFCNLSNYIISVERIKQFIHTPAEPPAIVEDKRPPSSWPSKGRIDIQALEIRYRPNAPLVLKGITCTFKEGNRVGVVGRTGSGKSTLISALFRLVEPSRGDIFIDGINICSMGLRDLRMNLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKALEKCQLKGTISNLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRVIRQEFAECTVITVAHRVPTVIDSDMVMVLSYGKMVEYDEPSKLMDTNSSFSKLVAEYWSSCRRNSSPNLSMKQ. 1473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11790 1472 SUPERFAMILY ABC transporter transmembrane region 272 582 IPR036640 GO:0005524|GO:0016020
Seca4g11790 1472 SMART AAA_5 1247 1432 IPR003593 GO:0016887
Seca4g11790 1472 SMART AAA_5 629 802 IPR003593 GO:0016887
Seca4g11790 1472 Gene3D ABC transporter type 1, transmembrane domain 259 584 IPR036640 GO:0005524|GO:0016020
Seca4g11790 1472 Gene3D ABC transporter type 1, transmembrane domain 872 1202 IPR036640 GO:0005524|GO:0016020
Seca4g11790 1472 ProSitePatterns ABC transporters family signature. 727 741 IPR017871 GO:0005524|GO:0016887
Seca4g11790 1472 CDD ABCC_MRP_domain1 602 802 - -
Seca4g11790 1472 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 604 825 IPR003439 GO:0005524
Seca4g11790 1472 Gene3D - 609 852 IPR027417 -
Seca4g11790 1472 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 284 568 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g11790 1472 Pfam ABC transporter 1238 1386 IPR003439 GO:0005524
Seca4g11790 1472 SUPERFAMILY ABC transporter transmembrane region 892 1203 IPR036640 GO:0005524|GO:0016020
Seca4g11790 1472 FunFam ABC transporter C family member 10 267 584 - -
Seca4g11790 1472 Pfam ABC transporter 620 754 IPR003439 GO:0005524
Seca4g11790 1472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1211 1454 IPR027417 -
Seca4g11790 1472 CDD ABC_6TM_ABCC_D2 903 1196 IPR044726 GO:0140359
Seca4g11790 1472 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 909 1171 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g11790 1472 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 206 1457 - -
Seca4g11790 1472 Pfam ABC transporter transmembrane region 906 1168 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g11790 1472 Pfam ABC transporter transmembrane region 284 547 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g11790 1472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 600 824 IPR027417 -
Seca4g11790 1472 CDD ABCC_MRP_domain2 1219 1439 - -
Seca4g11790 1472 Gene3D - 1204 1455 IPR027417 -
Seca4g11790 1472 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1223 1455 IPR003439 GO:0005524
Seca4g11790 1472 FunFam Multidrug resistance protein associated1 581 845 - -
Seca4g11790 1472 FunFam ABC transporter C family member 3 1204 1455 - -
Seca4g11790 1472 CDD ABC_6TM_ABCC_D1 285 576 IPR044746 GO:0140359
Seca4g11790 1472 FunFam ABC transporter C family member 5 870 1202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11790 Seca-Chr4 258400525 258407185 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11790 580 816 Calmodulin-binding Proteins AT2G36910 27.668 2.70e-20 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11790 - - gmx:100784827 2439.07