Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11788 ATGGTGTATTCTCAGAGTCAGACCTCACTAAGTGGACTTTCATGGACTTGTGGAGGAGAGTTTAATTTGGCTTCTTTCTGCGTACAAAGAAGCATAATTGATGGAATAAATCTGTTGTTCTTCTGTGTTTTCTTCCTATTTCTGCTGATAGGTTTAGGTGGAAAACACCATTCAAGTGATATCAGTAGAAAGGACCTTGTTTTGGTGGCTGCATCAATCTGTTGTTTTCTTACTTGCACTTTCTATTTCGGCTATGGTTTATATAATATAATAGATCACAATAATAATTTAACTTGGGTGGCTTATGCTATAAGGGGACTAGTTTGGATCTCTCTTGCAGTTTCATTGCTTAATCAAAGGAACAAAAGGATCATATGTCTAAACTCTGTTTGGTGGGTGTGCTTATGTGCATTACTTTCTGCTCTGAATATTGAAATTCTTCTCATACTGCACAGTATTCCTCTGTTTGATCTTCTGTCTTGGCTTGTGAGCTTCCTTCTTCTCCTTTGTGCTTTCAGAAACCATGGTTACTTTACTTCAAAACATTCCCAAAATAACACTATGTCTGAACCATTGTTGTGTGAAACTGAAAAGGCAGAAATAAGCCAAACAGGATTAAGCCAGGCAAATTTTTTTAGCAGATTAACATTTTCTTGGATCAATCCTTTACTCTCTTTGGGTTATACAAAGCCATTATCTCTTCAAGACATCCCTCCTATGCCCCCTGAAGACAAGGCTAACATGTGCTACCAACAGTTTGCTAGCACATGGGATTCCTTGTTAAGTGGGAATACCTCAAACAGTTCCAAGAATTTGGTTATCTGGACCATGTCAAGAGCTTTTCTGAAAGAGAATATTTTCATAGCAATCTGTGCATTAGGAAGGACTATTTGTGCAGCAGTTTCTCCTCTTATAGTCTATGCCTTTGTAAACCATGCAAACCGTAGTGAAGACAATTTGTATGAGGGTGTTTCTATATTGGGGTGCTTGGTTCTTGTCAAAATAGTGGAATCTGTGAGTGAGAGGCAGTGGTACTTTGACTCAAGGAGGTCAGGAACAAGAATGAGATCAGCATTAATGGTGGCAGTGTATGAAAAGCTCTTGAAGCTTTCAAGCATGGCAAGGAGAAGACACTCAACTGGGGAGATTGTGAATTACATAGCAGCTGATGCCAACCGGATGGGAGAATTCATGTGGTGGTTCCATTCAGGATGGAGCCTTATATTGCAAATTTTCTTAGCCATTGGTGTCCTTTTTTGGGTTGTGGGTCTTGGTGCTTTTCCTGGTTTAGCACTTCTTCTCATATTTGGAGTCTTCAATGCTCCATATGCAAAGAAGATTAAAAATTGTCAGGTACAAGTCCTGATTTCACAAGATCAGCGAATAAGGGCAACTTCAGAGATCTTAAACAATATCAAAATTATCAAATTACAATCATGGGAGGATAAATTTGAGAACATGATTGAGTCACTTCGTGCTAGTGAATTCAAGTGGTTGGCTGAGACACAGTTCACAAAGGCTTTGGGATCTGTACTGTATTTTATTTCTCCAACTGTTATTTGTGCAGTTGTTTTATTAGGAAGCACCCTCTTTAGGACAGCTCCATTAAATGCTGGTACCATCTTCACAGTTCTTGCTACATTGAGAAGCTTGGCAGAACCTGTCAGATTCATACCTGAGGCTGTTTCTGTGGTTATCCAAGTTAAAGTCTCATTTGACAGGCTAAACACTTTTCTCCTTGATGATGAGCTAAAGACTTACCAAAAGAGGAGCATTTCAATGTCAAAATCAGATAAATGCATTGAAATAGAAGCAGCTATTTTCAGCTGGGATGAGGAATCAGTGTCCCCTACTTTGAGAGACATCAATTTATGCATCAAACTTGGGCAAAAGGTAGCAGTTTGTGGGCCAGTTGGAGCTGGAAAGTCTTCTTTATTGCATGCTATCCTTGGAGAGATGCCTAAAATTTCAGGAACTGTTAATTTGCATGGAGCAGTAGCCTATGTTTCTCAAACTTCTTGGATCCAGAGTGGGACAGTTCGTGATAACATACTCTTTGGAAAACCAATGGAAAGAAATAGATATGAGAATGCCATTAAAGCATGTGCTTTGGATAAGGATATAAATAGTTTTAGCCATGGTGATCTTACAGAAATAGGTCAGAGAGGGCTTAACTTGAGTGGAGGACAGAAGCAAAGAGTTCAACTTGCCCGTGCTGTTTACAATGATGCTGATATATATCTTCTTGATGACCCTTTCAGTGCAGTAGATGCACACACTGCAGCAATTCTATTCCATGATTGTGTCATGAGTGCTCTCAGAGAGAAAACAGTCATCCTAGTGACCCACCAAGTAGAGTTTCTAACAGAAGTTGATAAAATTCTGGTTATAGAGGGTGGGCATATTACTCAAGAAGGAAGCCATGAGGAGTTATCAACATCTAGGGCAACCTTTGAACAACTTATTAATGCTCATCAAAACCAAGAAAAATGTCAAGAAATAAATAGAGTTAATAATGATGAACAACACCGTGGATGTGATCCCCTTAACAAAATTAGTGATGGAGAGATATGTGAGACAAGAATTGAAGGGCAACAACTTACTCAAGAAGAGCAGAGAGAAACGGGAACTGCTGGATGGAAACTGTTCCTGGATTATGTCATGATCTCCAAGGGACAGCTTTTTATGTGTTTAAGCTTACTAGCTCTGATATGTTTTGCTGCTCTTTTGGCTGCTTCATCTTATTGGCTTGCTATAGCCAGTGAAATTCCAAGCATTAGTAGTGGCATGCTGCTGGGAGTTTACACTGCATTGGCACTCTCTAGTGCAACGTTTGTTTACCTGAGGTCTTTCTTTGTAGCTCATCTTGGATTGAAGGCTTCTAAAACCTTCTTCTCAGGTTTCACTTCTGCCATTTTCAATGCTCCTATGTCATTCTTTGACTCAACTCCTGTTGGAAGAATTTTGACTCGAGCTTCTTCAGATTTGAGTATTTTGGACCTTGATGTACCTTATTCTATCACTTTTGTAGTATTTGTGGCAATTGAAATTCTGGTTACTATTTGTGCCATGGTTTCCATCACATGGCAAGTTCTCATTGTAGCTATTCCAGCTATGGTCGCATCAAAATATATTCAGGGATATTATCAAGCCTCTGCAAGGGAACTAATAAGGATCAATGGAACCACAAAAGCTCCAGTCATGAATTTTGCAGCTGAGACGTCACTTGGAGTGGTTACTGTAAGAACATTCAACATGGTAGACAGATTTTTCAAACACTACCTAAAGCTTGTGGACACAGATGCAACATTGTTCTTTCATTCTAATGTGGCAATGGAATGGTTAGTTTTGAGGATTGAAGTACTTCAAAATTTGACAGTCTTCACTGCAGCTTTATTACTTATCCTACTTCCTAAGGGATACGTGCCTTCAGGTCTTGTGGGGCTATCTCTTTCTTATGCGTTCACATTGACAGCATCCCAAATATTTTGGAATAGATGCTTTTGCAACTTATCAAATCAAATTATCTCAGTTGAAAGAATCAAGCAATTTATTCACATACCAGTGGAGCCTCCTGCCATTGTGGAGGATAACAGACCTCCATCTTCATGGCCTTCCAAGGGTAGGATTGATCTTCAAGAACTAGAGATTAGATATCGTCCAAATGCTCCATTGGTCCTTAAGGGTATCACTTGTACATTTAAAGAAGGGAATAGAGTAGGAGTTGTAGGAAGGACTGGAAGTGGAAAAAGTACACTTATAGGTGCTTTGTTTCGCTTAGTTGAGCCTTCAGGAGGTGCGATTCTTATTGATGGGATTAACATTTGCTCAATTGGGTTCAAGGAATTGAGAATGAAGCTAAGCATTATTCCTCAGGAACCAACTCTTTTCAAGGGCAGCATTAGGACAAACCTGGACCCTCTAGGCCTGTATGCAGACGATGAAATATGGAAGGCTTTAGAGAAATGTCAGCTTAAGGAAACAATCAGCACGCTCCCAAGTCTCTTGGATTCTTCTGTAAGCGATGAAGGTGGAAATTGGAGCTTGGGACAGCGACAACTATTTTGCCTTGCAAGAGTACTACTTAAGAGGAACAGAATTCTTGTTCTAGATGAAGCTACTGCATCCATTGACACTGCAACAGATGCCATTCTACAACGAGTAATTGAAAAAGAATTTGCAAATTGCACAGTTATAACTGTGGCACACAGAGTTCCAACTGTAATAGACAGTGACATGGTCATGGTCCTGTCTTATGGGAAACTAGTGGAATATGATCAGCCTTCAAAACTTATGGATACAAACTCTTCATTCTCTAGGTTGGTCGCTGAATATTGGTCCAGCTGCAGGAAGAATTCCTCCCCAACTATTAGCAGGCAGTGA 4383 0.3977 MVYSQSQTSLSGLSWTCGGEFNLASFCVQRSIIDGINLLFFCVFFLFLLIGLGGKHHSSDISRKDLVLVAASICCFLTCTFYFGYGLYNIIDHNNNLTWVAYAIRGLVWISLAVSLLNQRNKRIICLNSVWWVCLCALLSALNIEILLILHSIPLFDLLSWLVSFLLLLCAFRNHGYFTSKHSQNNTMSEPLLCETEKAEISQTGLSQANFFSRLTFSWINPLLSLGYTKPLSLQDIPPMPPEDKANMCYQQFASTWDSLLSGNTSNSSKNLVIWTMSRAFLKENIFIAICALGRTICAAVSPLIVYAFVNHANRSEDNLYEGVSILGCLVLVKIVESVSERQWYFDSRRSGTRMRSALMVAVYEKLLKLSSMARRRHSTGEIVNYIAADANRMGEFMWWFHSGWSLILQIFLAIGVLFWVVGLGAFPGLALLLIFGVFNAPYAKKIKNCQVQVLISQDQRIRATSEILNNIKIIKLQSWEDKFENMIESLRASEFKWLAETQFTKALGSVLYFISPTVICAVVLLGSTLFRTAPLNAGTIFTVLATLRSLAEPVRFIPEAVSVVIQVKVSFDRLNTFLLDDELKTYQKRSISMSKSDKCIEIEAAIFSWDEESVSPTLRDINLCIKLGQKVAVCGPVGAGKSSLLHAILGEMPKISGTVNLHGAVAYVSQTSWIQSGTVRDNILFGKPMERNRYENAIKACALDKDINSFSHGDLTEIGQRGLNLSGGQKQRVQLARAVYNDADIYLLDDPFSAVDAHTAAILFHDCVMSALREKTVILVTHQVEFLTEVDKILVIEGGHITQEGSHEELSTSRATFEQLINAHQNQEKCQEINRVNNDEQHRGCDPLNKISDGEICETRIEGQQLTQEEQRETGTAGWKLFLDYVMISKGQLFMCLSLLALICFAALLAASSYWLAIASEIPSISSGMLLGVYTALALSSATFVYLRSFFVAHLGLKASKTFFSGFTSAIFNAPMSFFDSTPVGRILTRASSDLSILDLDVPYSITFVVFVAIEILVTICAMVSITWQVLIVAIPAMVASKYIQGYYQASARELIRINGTTKAPVMNFAAETSLGVVTVRTFNMVDRFFKHYLKLVDTDATLFFHSNVAMEWLVLRIEVLQNLTVFTAALLLILLPKGYVPSGLVGLSLSYAFTLTASQIFWNRCFCNLSNQIISVERIKQFIHIPVEPPAIVEDNRPPSSWPSKGRIDLQELEIRYRPNAPLVLKGITCTFKEGNRVGVVGRTGSGKSTLIGALFRLVEPSGGAILIDGINICSIGFKELRMKLSIIPQEPTLFKGSIRTNLDPLGLYADDEIWKALEKCQLKETISTLPSLLDSSVSDEGGNWSLGQRQLFCLARVLLKRNRILVLDEATASIDTATDAILQRVIEKEFANCTVITVAHRVPTVIDSDMVMVLSYGKLVEYDQPSKLMDTNSSFSRLVAEYWSSCRKNSSPTISRQ. 1461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11788 1460 Gene3D ABC transporter type 1, transmembrane domain 859 1190 IPR036640 GO:0005524|GO:0016020
Seca4g11788 1460 FunFam Multidrug resistance protein associated1 580 844 - -
Seca4g11788 1460 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 207 1446 - -
Seca4g11788 1460 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 898 1160 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g11788 1460 FunFam ABC transporter C family member 10 269 583 - -
Seca4g11788 1460 ProSitePatterns ABC transporters family signature. 726 740 IPR017871 GO:0005524|GO:0016887
Seca4g11788 1460 CDD ABC_6TM_ABCC_D2 896 1185 IPR044726 GO:0140359
Seca4g11788 1460 SUPERFAMILY ABC transporter transmembrane region 274 581 IPR036640 GO:0005524|GO:0016020
Seca4g11788 1460 Gene3D ABC transporter type 1, transmembrane domain 273 583 IPR036640 GO:0005524|GO:0016020
Seca4g11788 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1200 1443 IPR027417 -
Seca4g11788 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 595 824 IPR027417 -
Seca4g11788 1460 Pfam ABC transporter 1227 1375 IPR003439 GO:0005524
Seca4g11788 1460 CDD ABC_6TM_ABCC_D1 287 575 IPR044746 GO:0140359
Seca4g11788 1460 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 601 824 IPR003439 GO:0005524
Seca4g11788 1460 FunFam ABC transporter C family member 5 859 1191 - -
Seca4g11788 1460 CDD ABCC_MRP_domain1 601 800 - -
Seca4g11788 1460 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 286 567 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g11788 1460 FunFam ABC transporter C family member 3 1193 1444 - -
Seca4g11788 1460 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1212 1444 IPR003439 GO:0005524
Seca4g11788 1460 Pfam ABC transporter transmembrane region 898 1158 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g11788 1460 Pfam ABC transporter transmembrane region 286 547 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g11788 1460 SUPERFAMILY ABC transporter transmembrane region 884 1192 IPR036640 GO:0005524|GO:0016020
Seca4g11788 1460 Pfam ABC transporter 619 753 IPR003439 GO:0005524
Seca4g11788 1460 CDD ABCC_MRP_domain2 1208 1428 - -
Seca4g11788 1460 SMART AAA_5 1236 1429 IPR003593 GO:0016887
Seca4g11788 1460 SMART AAA_5 628 801 IPR003593 GO:0016887
Seca4g11788 1460 Gene3D - 1193 1444 IPR027417 -
Seca4g11788 1460 Gene3D - 610 848 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11788 Seca-Chr4 258353475 258370065 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11788 344 811 Calmodulin-binding Proteins AT2G36910 24.152 2.54e-24 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11788 - - cave:132187277 1927.14