Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11787 TTTCTTATTAACTTTTCCAATTTTGAATTTGAAATATTGGGCCTAAAAGTGATTGACTTATATTATTTCTCTGTCACTGGATATGCAGGGGATTTCTGTCTGGGAGATTTTGACTTATATTCTTTCTGCTCTCAAAGGAGTATCATAGACATTATAAATCTATTTTTTGTCTGTGCCTTCTACACGTCTCTGCTTATCACTTTGATCAGAAGATGTTCTGAAAGTGGTAGCCACAGAAAGAACTGGATTTTCCCAGTTGTCTCAATCTGCTGTGCTCTTATTAGCATTGCACATTTTAGCAATGGCCTTTGGAATCTCATAGCCAAAACAAGTAACCTGAGCTGGTTAGCTTGTATTATGAGAGCTTTTGTTTGGATTTCTTATACAGTTTCTTTGCTTGTTCAGAGATACAAATGGTTAAAAATTCTGAACTTTGTGTGGTGGGCATCTTCCTGTGTATTGATTTCAGCTCTCAACATTGAAATTCTGTTCAAAGAGCATGCAATTGAAATATTTGATATGGTACAATGGCTTGCACACTTCTTACTTATCTTCTGTGCCTTCCAAAATCTTGGTTATTTTGTCACTTCCCAAAGTATCCAAGATACTACCAATTTATCTGAGCCACTATTAGCACAGAAAATTGAAACTAAACAAACACAACTAGGCCATGCTACTCTTCTCAGTAAGTTGACTTTCTCTTGGGTTAATTCTTTACTCAGTAAGGGTTACTCAAAGCCACTAGCTCTTGAAGACATCCCTACTCTTCTTTCTGAAGATGAAGCACACTTGGCCTACCAAAACTTCTTGCATGAATGGGAATCCCTTGTCAGAGAGAGAAGCAAGAACAATACCAAAAATTTGGTTCTTTGGGCTGTGGTTAGAACTTACTTCAAAGAAAACATATTAATAGCATTTTACGCATTACTAAGAACTATTTCTGTTGTTGTTTCTCCTCTAATACTATATGCTTTTGTAAACTACTCAAATAGCACTGAGGCAAATCTCAAAGAAGGTTTTTCCATAGTGGGTTTTCTTGTTCTCACCAAAGTGTTTGAGTCTTTGCCCCAAAGACACTATTGTTTTGGTTCAAGGAGGTCAGGGATGAAAATGAGATCAGCTCTAATGGTAGCAGTCTATGAAAAACAGCTAAAGCTTTCAAGCTCAGCGAGGAGAAGACACTCAACTGGTGAAATTGTGAATTACATTGCAGTTGATGCATATCGAATGGGGGAATTTCCATGGTGGTTTCATGTAACATGGACTTCAGCATTGCAACTTGTTCTGTCTATTAGTCTCCTTTTTTATGTTGTGGGTTTTGGAGCTCTTCCTGGTTTAGTCCCTCTCCTCATATGTGGACTTCTCAATATCCCATTTGCAAAGATCCTACAAAATTGTCACTCACAATTCATGATTGCACAGGATGTGCGTCTTAGATCAACTTCAGAAATTCTAAACAGCATGAAAATCATCAAGTTACAATCCTGGGAGGAAAAATTCAAGAATTTAGTTTTGTCCCTACGTGCTGAAGAGTTCATATGGTTGTCTAAGGCACAAGTCATGAAAGCTTATATGTCATGTATTTATTGGATGTCTCCTACCATTGTTCCTTCTGTTATTTTCCTCGGATGTGCTCTTTTCAATAGTGCCCCATTGAATGCTGAAACCATTTTCACAGTTATTGCAACGTTGAAGATGGTTGCAGAACCTGTTAGAAGGATCCCAGAGGCTCTATCTATTATGATCCAAGTTAAGGTATCCTTTGATCGTCTCAATACCTTTTTGCTTGATGAAGAGCTAACCAGTGATGATAATGGAAGAAGTATAAAGCAATGTTCAGTTAATGCTGTGGAAATTCATGCTGGCAACTTCATCTGGGATCATGAATCAGTGTCCCCAACTTTAACAAATGTGAATTTGGAAATCAAATGGGGACAGAAAATAGCAGTTTGTGGGCCAGTTGGAGCTGGGAAATCATCTCTTCTGTATGCCATACTTGGAGACATTCCTATGATTTCAGGAAGGGTTAATGTAGGTGGCACCCTAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGAGATAATATACTCTTTGGGAAGCCAATGGACAAAACAAGATATGAGAATGCCATTAGAGTTTGTGCCTTGGATAAGGATATTAATGATTTTAGCCATGGTGATCTTACAGAAATAGGCCAGAGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTCGAGCAGTCTACAATAATGCTGACATCTATCTCCTTGATGACCCTTTCAGTGCAGTTGATGCGCACACTGCTGCTATTCTTTTCAATGACTGTGTCATGAGAGCTTTAAAAGATAAAACAGTCATTCTAGTAACTCATCAAGTGGAGTTTCTTTCTGAAGTTGATACAGTCCTGGTAATGGAGGGAGGAAAAGTTACTCAATCAGGTAATTATGAGGATCTCCTGACAGCTGGCACAACCTTTGAACAACTTGTGAGAGCCCACAGAGAAGTATTAACAGAACTGGATCAAAATAATGAAAGTTCTGAAATTGAGATTATGGCACATCTAGAAGAGTCCCATGGTTTTTATGTCACTAAAAATCAAAATGAGGGGGAGATTTCTACCAAGGGACAACTTACACAAGAAGAAGAAAAAGAGATTGGTGATATTGGCTGGAAGCCATTCTGGGATTATATTTCTTTTCCTAGGGGATCATCCATGTTGTGTTTGATCTTATTAGTTCAATCTGCTTTTGTTTCTTTGCAGACTGCATCATCTTTTTGGCTTGCTTTAGCTATTGAAATTCCAAAGTTAACTAGTGGCACCTTGATTGGAGTTTATTCACTAATTTCATTTATTAGTGCCGCGTTTGTATATCTAAGATCTCTCTTGGTTGCACATCTTGGACTAAAAGCTTCTTCAGCCATATTCTCAAGTTTCACTACGGCTATCTTCAATGCTCCTATGCTATTCTTTGACTCGACACCTGTAGGAAGGATTTTAACCCGAGCTTCTTCAGATTTGAGTATTCTGGACCTTGATGTACCTTATTCTATCACCTTTGTAGTATTTGTAGCAATTGAAATTCTGGTTACAATTTGTGCCATGGTTTCCATTACATGGCAAGTTCTCATTGTAGCTATTCCAGCTATGGTCGCATCAAAATATATTCAGGGATATTATCAAGCCTCAGCAAGGGAACTAATAAGGATCAATGGAACCACAAAAGCTCCAGTCATGAATTTTGCAGCTGAAACGTCACTTGGAGTGGTTACTGTAAGAACATTCAACATGGTAGACAGATTTTTCAAACACTACCTAAAGCTTGTGGACACAGATGCAACATTGTTCTTTCATTCTAATGTGGCAATGGAATGGTTAGTTTTAAGGATTGAAGTACTTCAAAATTTGACAGTCTTCACTGCAGCTTTATTACTTATCCTACTTCCTAAGGGATACGTGCCTTCAGGTCTTGTGGGGCTATCTCTTTCTTATGCGTTCACATTGACAGCATCCCAAATATTTTGGAATAGATGCTTTTGCAACTTATCAAATCAAATTATCTCAGTTGAAAGAATCAAGCAATTTATTCACATACCAGTGGAGCCTCCTGCCATTGTGGAGGATAACAGACCTCCATCTTCATGGCCTTCCAAGGGTAGGATTGATCTTCAAGAACTAGAGATTAGATATCGTCCAAATGCTCCATTGGTCCTTAAGGGTATCACTTGTACATTTAAAGAAGGGAATAGAGTAGGAGTTGTAGGAAGGACTGGAAGTGGAAAAAGTACACTTATAGGTGCTTTGTTTCGCTTAGTTGAACCTTCAGGAGGTGCGATTCTTATTGATGGGATTAACATATGCTCAATGGGGTTGAAGGAATTGAGAATGAAACTAAGCATTATTCCTCAGGAACCAACTCTTTTCAAGGGCAGCATTAGGACAAACCTGGACCCTCTGGGCCTGTATGCAGACGATGAAATATGGAAGAAAAGTTTTGCAGTAAGTGATGAAGGTGGAAATTGGAGTTTGGGACAACGCCAACTGTTTTGTCTTGCAAGAGTATTACTTAAGAGGAACAGAATCCTTGTTCTAGATGAAGCTACTGCATCCATTGACACTGCAACAGATGCCATTCTACAAGGAGTAATTAAACAAGAATTTGCAGAATGCACAGTTATAACTGTGGCTCACAGAGTTCCAACTGTAATAGACAGTGACATGGTCATGGTCCTGTCTTATGGGAAACTAGTGGAATATGATGAGCCTTCAAAACTTATGGATACAAACTCTTCATTCTCTAGATTGGTCGCTGAATATTGGTCCAGCTGCAGGAAGAATTCCTCCCCACATATTAAATAA 4383 0.386 FLINFSNFEFEILGLKVIDLYYFSVTGYAGDFCLGDFDLYSFCSQRSIIDIINLFFVCAFYTSLLITLIRRCSESGSHRKNWIFPVVSICCALISIAHFSNGLWNLIAKTSNLSWLACIMRAFVWISYTVSLLVQRYKWLKILNFVWWASSCVLISALNIEILFKEHAIEIFDMVQWLAHFLLIFCAFQNLGYFVTSQSIQDTTNLSEPLLAQKIETKQTQLGHATLLSKLTFSWVNSLLSKGYSKPLALEDIPTLLSEDEAHLAYQNFLHEWESLVRERSKNNTKNLVLWAVVRTYFKENILIAFYALLRTISVVVSPLILYAFVNYSNSTEANLKEGFSIVGFLVLTKVFESLPQRHYCFGSRRSGMKMRSALMVAVYEKQLKLSSSARRRHSTGEIVNYIAVDAYRMGEFPWWFHVTWTSALQLVLSISLLFYVVGFGALPGLVPLLICGLLNIPFAKILQNCHSQFMIAQDVRLRSTSEILNSMKIIKLQSWEEKFKNLVLSLRAEEFIWLSKAQVMKAYMSCIYWMSPTIVPSVIFLGCALFNSAPLNAETIFTVIATLKMVAEPVRRIPEALSIMIQVKVSFDRLNTFLLDEELTSDDNGRSIKQCSVNAVEIHAGNFIWDHESVSPTLTNVNLEIKWGQKIAVCGPVGAGKSSLLYAILGDIPMISGRVNVGGTLAYVSQTSWIQSGTVRDNILFGKPMDKTRYENAIRVCALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNNADIYLLDDPFSAVDAHTAAILFNDCVMRALKDKTVILVTHQVEFLSEVDTVLVMEGGKVTQSGNYEDLLTAGTTFEQLVRAHREVLTELDQNNESSEIEIMAHLEESHGFYVTKNQNEGEISTKGQLTQEEEKEIGDIGWKPFWDYISFPRGSSMLCLILLVQSAFVSLQTASSFWLALAIEIPKLTSGTLIGVYSLISFISAAFVYLRSLLVAHLGLKASSAIFSSFTTAIFNAPMLFFDSTPVGRILTRASSDLSILDLDVPYSITFVVFVAIEILVTICAMVSITWQVLIVAIPAMVASKYIQGYYQASARELIRINGTTKAPVMNFAAETSLGVVTVRTFNMVDRFFKHYLKLVDTDATLFFHSNVAMEWLVLRIEVLQNLTVFTAALLLILLPKGYVPSGLVGLSLSYAFTLTASQIFWNRCFCNLSNQIISVERIKQFIHIPVEPPAIVEDNRPPSSWPSKGRIDLQELEIRYRPNAPLVLKGITCTFKEGNRVGVVGRTGSGKSTLIGALFRLVEPSGGAILIDGINICSMGLKELRMKLSIIPQEPTLFKGSIRTNLDPLGLYADDEIWKKSFAVSDEGGNWSLGQRQLFCLARVLLKRNRILVLDEATASIDTATDAILQGVIKQEFAECTVITVAHRVPTVIDSDMVMVLSYGKLVEYDEPSKLMDTNSSFSRLVAEYWSSCRKNSSPHIK. 1461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11787 1460 Pfam ABC transporter transmembrane region 916 1177 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g11787 1460 Pfam ABC transporter transmembrane region 304 562 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g11787 1460 CDD ABC_6TM_ABCC_D2 914 1204 IPR044726 GO:0140359
Seca4g11787 1460 FunFam ABC transporter C family member 10 285 599 - -
Seca4g11787 1460 Gene3D ABC transporter type 1, transmembrane domain 270 605 IPR036640 GO:0005524|GO:0016020
Seca4g11787 1460 Gene3D ABC transporter type 1, transmembrane domain 879 1209 IPR036640 GO:0005524|GO:0016020
Seca4g11787 1460 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1231 1446 IPR003439 GO:0005524
Seca4g11787 1460 SUPERFAMILY ABC transporter transmembrane region 290 597 IPR036640 GO:0005524|GO:0016020
Seca4g11787 1460 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 224 1448 - -
Seca4g11787 1460 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 302 583 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g11787 1460 Gene3D - 624 866 IPR027417 -
Seca4g11787 1460 Gene3D - 1212 1446 IPR027417 -
Seca4g11787 1460 FunFam Multidrug resistance-associated protein member 4 1213 1447 - -
Seca4g11787 1460 Pfam ABC transporter 1246 1377 IPR003439 GO:0005524
Seca4g11787 1460 CDD ABC_6TM_ABCC_D1 303 591 IPR044746 GO:0140359
Seca4g11787 1460 ProSitePatterns ABC transporters family signature. 742 756 IPR017871 GO:0005524|GO:0016887
Seca4g11787 1460 Coils Coil 845 865 - -
Seca4g11787 1460 SUPERFAMILY ABC transporter transmembrane region 900 1211 IPR036640 GO:0005524|GO:0016020
Seca4g11787 1460 Pfam ABC transporter 635 769 IPR003439 GO:0005524
Seca4g11787 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1219 1445 IPR027417 -
Seca4g11787 1460 CDD ABCC_MRP_domain2 1227 1430 - -
Seca4g11787 1460 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 619 840 IPR003439 GO:0005524
Seca4g11787 1460 FunFam ABC transporter C family member 5 879 1210 - -
Seca4g11787 1460 FunFam Multidrug resistance protein associated1 596 859 - -
Seca4g11787 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 839 IPR027417 -
Seca4g11787 1460 SMART AAA_5 1255 1430 IPR003593 GO:0016887
Seca4g11787 1460 SMART AAA_5 644 817 IPR003593 GO:0016887
Seca4g11787 1460 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 917 1179 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g11787 1460 CDD ABCC_MRP_domain1 617 817 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11787 Seca-Chr4 258317512 258323738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11787 595 831 Calmodulin-binding Proteins AT2G36910 29.644 1.37e-23 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11787 - - gmx:100804798 2270.35