Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11785 ATGAGTCGAGAGCAACAGAAGCGGGGGAAGCAAGAGAAAGGTTCTGATGGTGCTGAGAAGGTTATTGTTGCCGTTAAGGCATCAAGGGAAATTCCAAAGACTGCTCTTGTTTGGTCTCTCACTCATGTTGTTCAACCTGGAGATTGCATAACTCTGCTAGTGGTTGTGCCTTCACAAACTTCAGGCAGAAGATTATGGGGTTTTCCAAGATTTGCTGGTGACTGTGCCAGTGGTATTAAGAAGTACCCTCCAGGAACAATTTCAGAGCAGAAGAGTGATATCACTGATTCTTGCTCTCAGATGATCCTTCAGCTCCATGATGTCTATGATCCAAACAAGATAAATGTCAGGATTAAAATTGTTTCCGGATCACCTTGTGGAGCAGTGGCTGCAGAAGCCAAGAAAGCACAAGCCAATTGGGTCGTATTAGACAAACAGCTCAAACATGAGGAAAAGCGATGCATGGAAGAGCTGCAGTGTAACATTGTGGTTATGAAGCGTTCTCAACCAAAAGTGCTACGCTTGAATTTGATTGGACCACAAAAGAAGGATGTTGAAGAAGCAAGTCCATCATCCCCTTCTGAGCAAGATGATGTGCCTGAAAAGCAAACCAAAAAGAAGATTGATTCTTTGAATTCTATCAAAGGACCAACTGTCACTCCAACTAGCAGCCCTGAGCTAGGGACACCATTCACTACAACTGAAGCTGGTACTTCATCAGCTTCAAGCTCTGATCCAGGAACTTCACCATTCTTTATCTCAGAGATGAATGGTGAGTCAAAAAAAGAGGAAACCATTCAGGAAAATCATGAACTTGGTGATACTAATTCAGACACAGAAAGTGAAAGTCTTTCCACTTCTTCAGCAAGCTTGAGATTCCAGCCTTGGATCACAGAATTGCTTTTACATCAGCAATCATCTCAACGCAATGAAGACAGGTCTGAGACATATCATGGTATGCCTCAAGCATCTACTACCAGAGCTTTGTTTGAAAAGTTTTCTAGGCTTGATAGAGGAGCTGGAATTGAAGTTTCAACTTATAGAAGTGACTCAGATTTCAGTGGTAATCTAAGAGAAGCAATAGCATTATCAGGAAATGCCCCACCTGGTCCCCCTCCATTGTGTTCAATATGTCAACATAAGGCACCTGTTTTTGGAAAACCACCAAGGTGGTTCAGCTATGCTGAGCTAGAACTTGCTACTGGTGGATTTTCACAAGCCAACTTCTTGGCAGAAGGAGGATTTGGATCTGTTCACAGAGGGGTTCTACCAGAAGGACAAGTCATTGCTGTGAAGCAACATAAATTGGCTAGTTCTCAAGGTGATCTTGAGTTTTGCTCTGAGGTAGAAGTCCTAAGCTGTGCTCAGCACCGAAATGTTGTTATGCTGATTGGATTCTGTATAGAGGATAAGAGAAGACTACTGGTTTATGAGTACATATGCAATGGATCATTGGATTCACATTTATATGGGCGACAACGGGAGCCATTGGAATGGTGTGCAAGGCAAAAAATTGCTGTTGGAGCTGCTCGTGGATTAAGGTATCTTCATGAAGAATGCAGAGTGGGTTGTATTATCCACCGTGACATGAGGCCAAACAACATTCTCATAACTCATGATTTTGAACCTCTGGTTGGTGATTTTGGACTGGCAAGGTGGCAGCCTGATGGAGACACAGGTGTGGAAACTAGAGTTATTGGAACATTTGGGTATGTGTTTTATTGA 1725 0.4284 MSREQQKRGKQEKGSDGAEKVIVAVKASREIPKTALVWSLTHVVQPGDCITLLVVVPSQTSGRRLWGFPRFAGDCASGIKKYPPGTISEQKSDITDSCSQMILQLHDVYDPNKINVRIKIVSGSPCGAVAAEAKKAQANWVVLDKQLKHEEKRCMEELQCNIVVMKRSQPKVLRLNLIGPQKKDVEEASPSSPSEQDDVPEKQTKKKIDSLNSIKGPTVTPTSSPELGTPFTTTEAGTSSASSSDPGTSPFFISEMNGESKKEETIQENHELGDTNSDTESESLSTSSASLRFQPWITELLLHQQSSQRNEDRSETYHGMPQASTTRALFEKFSRLDRGAGIEVSTYRSDSDFSGNLREAIALSGNAPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGFGSVHRGVLPEGQVIAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQREPLEWCARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYVFY. 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11785 574 Gene3D Phosphorylase Kinase; domain 1 376 479 - -
Seca4g11785 574 FunFam Dual-specific kinase DSK1-like 12 166 - -
Seca4g11785 574 MobiDBLite consensus disorder prediction 257 277 - -
Seca4g11785 574 ProSiteProfiles Protein kinase domain profile. 404 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11785 574 MobiDBLite consensus disorder prediction 304 323 - -
Seca4g11785 574 ProSitePatterns Tyrosine protein kinases specific active-site signature. 525 537 IPR008266 GO:0004672|GO:0006468
Seca4g11785 574 SUPERFAMILY Protein kinase-like (PK-like) 389 572 IPR011009 -
Seca4g11785 574 MobiDBLite consensus disorder prediction 210 255 - -
Seca4g11785 574 MobiDBLite consensus disorder prediction 182 287 - -
Seca4g11785 574 PANTHER OS01G0750732 PROTEIN 153 572 - -
Seca4g11785 574 Gene3D Transferase(Phosphotransferase) domain 1 480 573 - -
Seca4g11785 574 Pfam Protein tyrosine and serine/threonine kinase 408 554 IPR001245 GO:0004672|GO:0006468
Seca4g11785 574 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 376 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11785 Seca-Chr4 258236113 258238912 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11785 345 572 Trihelix Transcription Factor Family AT1G68690 49.123 1.20e-61 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Seca4g11785 PK_Tyr_Ser-Thr 6.6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11785 - - gmx:100816340 1051.58