Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11784 ATGCCTTGCTGTATGTGTAGGTATTTGGCTCCTGAATATGCTCAAAGTGGCCAAATCACTGAAAAAGCTGATGTTTATTCATTTGGGGTGGTATTAGTGGAGCTTGTTACAGGAAGAAAAGCTGTGGATCTCACTCGACCAAAGGGACAGCAATGTCTTACTGAGTGGGCACGGCCTCTATTAGAAGAATATGCTATTGAGGAACTAATTGACCCTAGGTTGGGTGGCCACTATTTAGAACATGAGGTCTATTGCATGCTCCATGCTGCATCATTATGCATACGCAGAGATCCTCATTCTAGACCACGCATGTCACAGGTTCTCCGAATACTAGAGGGTGACATGGTGATGGACACAAATTACATTTCAACTCCAGGTTATGATGTGGGAAACAGGAGTGGTCGAATTTGGTCAGAGCCACTGCAGAGGCAGCACCATTACAGTGGTCCCCTCTTAGAAGAGTCACTTGAGTCATTCAGTGGAAAGCTATCCCTTGACAAGTACAAGCCTTCCTATTGGGATAGGGATAGGGACAAGGCTAGGAGGGATTCATGTGATGATGACATTTAA 570 0.4509 MPCCMCRYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLTRPKGQQCLTEWARPLLEEYAIEELIDPRLGGHYLEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDMVMDTNYISTPGYDVGNRSGRIWSEPLQRQHHYSGPLLEESLESFSGKLSLDKYKPSYWDRDRDKARRDSCDDDI. 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11784 189 ProSiteProfiles Protein kinase domain profile. 1 117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11784 189 PANTHER OS01G0750732 PROTEIN 7 127 - -
Seca4g11784 189 Gene3D Transferase(Phosphotransferase) domain 1 1 123 - -
Seca4g11784 189 SUPERFAMILY Protein kinase-like (PK-like) 5 122 IPR011009 -
Seca4g11784 189 Pfam Protein tyrosine and serine/threonine kinase 6 110 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11784 Seca-Chr4 258234590 258236055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11784 8 130 Trihelix Transcription Factor Family AT1G70460 52.632 1.07e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Seca4g11784 PK_Tyr_Ser-Thr 5.8e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11784 - - gmx:100816340 346.665