Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11781 ATGGAGGAAACGCCTAAGCTTCTCCATGGAACAATTGAAGCTACCATCTTCAATGCCTCACCTTTGAGCTCAATATTTCAGTGCATATGTTCAACTGGAGAGCCTGCTTATGTGACCATCAAGATAGACAACAACAAGGTTGCAAAAACAAGCCAAGAAACCAATTGTGTCTGGAACCAAACCTTTCAGATTCATTGTGCTCATCCACCTGATTCAACTATCACCGTTACACTGAAAACATCATGTTCCATATTGGGTAAATTCCATATCCAGGCCCATCAGCTATTGAAGGAACCAAATTTGATCAATGGCTTCTTCCCTCTCCTCATGGAAAATGGAAAACCACACCCAAAACTTAAATTAAAGTTTTTATTATGGTTCAAGCCAGCAGAATTGGCACCTAGTTGGGCAGAGGTACTAACCAATGGGGAATTTCAAGGGCTGAGGGATGCTACATTCCCACAAAGGTCCAATTGTCATGTCAAACTTTATCATGATGCTCATCATTCTCCTGCTTTCCAACCTCCTTTTGATCTATGTGGAACTCCAAAAAAGCTATGGGAGGATGTCTATAAAGCCATTGAGGGTGCAAAGTACATAGTTTATATTGCTGGCTGGTCCTTCAATCCCAAGATGGTTCTGGTTAGAGATCCTCATACAGAAATCCCACATGCTAGAGGAATAAAGCTGGGTGAGTTACTTAAGAAGAAGGCAGAGGAAGGAGTTGCTGTGAGAGTTATGCTTTGGGATGATGAAACATCTTTGCCCTTTATTAAGAACAAAGGTGTAATGAACACCCATGATGAGGATGCTTTTGCTTATTTCAACCACACAAAAGTAATATGCAGGAAGTGTCCAAGGTTACACAATAAGTTCCCCACACTATTTGCTCACCATCAAAAGACTATAACTGTGGATATTGCTGAACACAAATCTGTTAGTGACAGAGAACTTGTGAGCTTTGTGGGTGGGTTAGATTTGTGTGATGGCCGGTATGATACAGAACAACATTCATTGTTTCAAACACTCATTAAGGAATCCCATTGTTATGACTTTTACCAAACAAACATTGGAGGAGCTAACCTCAACAAAGGAGGGCCAAGAGTGCCTTGGCATGATGCTCATGCTTGTGTTACTGGTGAGGCTGCTTGGGATATGCTAACCAATTTTGAGCAAAGATGGACAAAGCAGTGTGATCCTTCTTTTCTAGTCCCTTCTAGCACCTTGCTGAATCTTATGCCTCCTACAAGCCCAAGCACTTCCATAGAGAGGAATTGGAAAGTTCAAGTATACAGGTCAATTGACCATGTTTCTGTTGGCAAGTTGTTTGGGAAGTTCACTGTGGATGTGGAGAGAAGCATCCATGAAGCATATGTTGAAGCAATAAGGCGTGCTGAAAGGTTTATCTACATTGAAAACCAATATTTCATTGGGGGGTGCCATTTATGGGAGAAAGATAAGCACTGTGGCTGCACAAATCTAATTCCCATTGAAATTGCACTCAAGGTGGTTAATAAGATCAAAGCAAAGGAGAGGTTTGCAGTGTACATAGTGATACCAATGTGGCCAGAAGGAGTGCCTGAAAGTGAACCAGTTCAAGATATACTGCATTGGACCAGAGAAACAATGGCAATGATGTATAGGTTGATTGGAGAAGCAATACAAGAAAGTGGGGAACCAGGACACCCAAGAGACTACTTGAATTTCTTCTGTCTTGCAAATAGGGAGCACAAGGGAAATGGGGAGTATCTTCCACCAGATTCTCCTCATCCTGAAACACAATATTGGAATGCCCAAAAAAATAGGAGATTCATGGTTTATGTTCACTCCAAGCTCATGATAGTGGACGACCTATACATATTAATAGGATCAGCTAATGTGAACCAAAGATCAATGGACGGGCAAAGGGACACTGAGATTGCCTTAGGATGCTACCAGTCTCAATTTAAAACCATATCAGAAAGTTTAAAACCATGTGTGCTTGGTGATGTTCATGCATACAGAATGTCACTATGGTATGAGCACACCAATAGTGCTGAGGAATTGTTGTTAGAGCCAGAAAGTTTGGAATGTGTGCAGAGAATGCGCTCAATAGGAGACCAAATGTGGGGAATCTACAGCAGTGCAGAAATTGTGGACATGGAAGGTGTTCACCTTGTTACTTACCCTGTTAAGGTAACACAAGAAGGGTATGTGAAGGCCCTCACTAATGGAATTCATTTTCCTGATACAAATTCGCTAAAGACTCTCCATGTTCGTCTTCTCTCTCTTTCTTCCATTGCCAATATTTTAGATTTCAGATTTCTGATTTCTCGCATCGCAGTTACTGTTAATGAAATTGAGGCGTTGCACGACATGTTCAAGAAGTTGAGTAGTTCAATCATTGACGATGGCCTCATCCACAAGGAAGAGCTCACGTTGGCACTATTGAAGACCGCATCTGGCAAGAATCTTTTCCTTGATAGGGTGTTTGATCTCTTTGATGAAAAGAAAAATGGCGTTATAGAATTTGAGGAGTTTGTGCATGCTCTCACTGTCTTTCATCCTTATACTCCTTTGGAAAAGAAAATTGATTTTGCTTTTAGATTGTACGACTTGAGACAGACAGGATATATTGAGCGAGAAGAAGTTAGACAAATGGTGGTTGCAATTATGGCAGAGTGTGGCATAGATCTGGAAGATGAAGTCCTTGAAGCCATTATTGATAAGACATTTCATGATGCTGATGCTGATAAGGATGATAAGATAAGTAAAGAAGAATGGAAGGAGTTTGTCATTCGGCACCCAACACTCTTGAAGCACCTGACTCTTCCTTATTTGAAGGACATCACCACAGTATTTACCAATTTCATTTTCAACACCCAAGTTGATGATTCCCACTGGCAACTCAATAGCCATCATAAACCGTAA 2910 0.4103 MEETPKLLHGTIEATIFNASPLSSIFQCICSTGEPAYVTIKIDNNKVAKTSQETNCVWNQTFQIHCAHPPDSTITVTLKTSCSILGKFHIQAHQLLKEPNLINGFFPLLMENGKPHPKLKLKFLLWFKPAELAPSWAEVLTNGEFQGLRDATFPQRSNCHVKLYHDAHHSPAFQPPFDLCGTPKKLWEDVYKAIEGAKYIVYIAGWSFNPKMVLVRDPHTEIPHARGIKLGELLKKKAEEGVAVRVMLWDDETSLPFIKNKGVMNTHDEDAFAYFNHTKVICRKCPRLHNKFPTLFAHHQKTITVDIAEHKSVSDRELVSFVGGLDLCDGRYDTEQHSLFQTLIKESHCYDFYQTNIGGANLNKGGPRVPWHDAHACVTGEAAWDMLTNFEQRWTKQCDPSFLVPSSTLLNLMPPTSPSTSIERNWKVQVYRSIDHVSVGKLFGKFTVDVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDKHCGCTNLIPIEIALKVVNKIKAKERFAVYIVIPMWPEGVPESEPVQDILHWTRETMAMMYRLIGEAIQESGEPGHPRDYLNFFCLANREHKGNGEYLPPDSPHPETQYWNAQKNRRFMVYVHSKLMIVDDLYILIGSANVNQRSMDGQRDTEIALGCYQSQFKTISESLKPCVLGDVHAYRMSLWYEHTNSAEELLLEPESLECVQRMRSIGDQMWGIYSSAEIVDMEGVHLVTYPVKVTQEGYVKALTNGIHFPDTNSLKTLHVRLLSLSSIANILDFRFLISRIAVTVNEIEALHDMFKKLSSSIIDDGLIHKEELTLALLKTASGKNLFLDRVFDLFDEKKNGVIEFEEFVHALTVFHPYTPLEKKIDFAFRLYDLRQTGYIEREEVRQMVVAIMAECGIDLEDEVLEAIIDKTFHDADADKDDKISKEEWKEFVIRHPTLLKHLTLPYLKDITTVFTNFIFNTQVDDSHWQLNSHHKP. 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11781 969 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 604 631 IPR001736 GO:0003824
Seca4g11781 969 Gene3D Endonuclease Chain A 418 655 - -
Seca4g11781 969 Pfam EF hand 820 840 IPR002048 GO:0005509
Seca4g11781 969 Gene3D Endonuclease Chain A 174 411 - -
Seca4g11781 969 Pfam Phospholipase D C terminal 680 745 IPR024632 -
Seca4g11781 969 PRINTS Recoverin family signature 870 888 - -
Seca4g11781 969 PRINTS Recoverin family signature 916 936 - -
Seca4g11781 969 PRINTS Recoverin family signature 823 844 - -
Seca4g11781 969 CDD PLDc_pPLD_like_2 450 648 - -
Seca4g11781 969 Gene3D - 768 959 - -
Seca4g11781 969 PANTHER PHOSPHOLIPASE D 7 743 IPR015679 -
Seca4g11781 969 CDD EFh 820 881 IPR002048 GO:0005509
Seca4g11781 969 Pfam EF-hand domain pair 855 924 IPR002048 GO:0005509
Seca4g11781 969 SUPERFAMILY EF-hand 769 950 IPR011992 -
Seca4g11781 969 Pfam C2 domain 36 108 IPR000008 -
Seca4g11781 969 Gene3D C2 domain 4 128 IPR035892 -
Seca4g11781 969 FunFam calcineurin B-like protein 3 765 958 - -
Seca4g11781 969 SMART pld_4 294 331 IPR001736 GO:0003824
Seca4g11781 969 SMART pld_4 604 631 IPR001736 GO:0003824
Seca4g11781 969 ProSitePatterns EF-hand calcium-binding domain. 909 921 IPR018247 -
Seca4g11781 969 ProSiteProfiles EF-hand calcium-binding domain profile. 815 850 IPR002048 GO:0005509
Seca4g11781 969 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 122 IPR035892 -
Seca4g11781 969 ProSiteProfiles EF-hand calcium-binding domain profile. 896 931 IPR002048 GO:0005509
Seca4g11781 969 SMART efh_1 819 847 IPR002048 GO:0005509
Seca4g11781 969 SMART efh_1 856 884 IPR002048 GO:0005509
Seca4g11781 969 SMART efh_1 900 928 IPR002048 GO:0005509
Seca4g11781 969 Pfam Phospholipase D Active site motif 607 631 IPR001736 GO:0003824
Seca4g11781 969 Pfam Phospholipase D Active site motif 295 331 IPR001736 GO:0003824
Seca4g11781 969 SUPERFAMILY Phospholipase D/nuclease 141 404 - -
Seca4g11781 969 ProSiteProfiles EF-hand calcium-binding domain profile. 852 887 IPR002048 GO:0005509
Seca4g11781 969 SUPERFAMILY Phospholipase D/nuclease 427 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11781 Seca-Chr4 258201803 258214729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11781 27 747 Phospholipase D Gene Family (Wang group) AT1G55180 62.432 0.0 944
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11781 K01115 - gmx:100812642 1275.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11781 4 258201803 258214729 Seca4g11781 4 258201803 258214729 ECH
Seca4g11781 4 258201803 258214729 Seca4g08782 4 209360427 209362437 PCT