Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11772 ATGAGACTCCAGTTTATTTTCCTGTTAATTAAGCTACATTTAGTTGTCAGTACTCAACAACAGTTTCATGAATATACAGCCACCAAACTGCTCCACTCCAGAGCCAGAAGCCATTTAAGTGTTGCATTCCCACCATCAGTGTCATCTTCTGAAGTTCCTTCAACTATTGCACACCCACCTGATGAGTCATCTTCCGGTGTTGCTGCAAGTATTGCATTTCCACCTTCAAAGTCAATTGACAAAGCTCCTACAAAGAAATGGACACATAGTTCTGTGGATTCTCCAATATCACATCATAAGCATCACTATTCCATAACAAAGAACCACAATCCAACTCCAGGGCCAACCTACCCAGTCCAGGCTCCTACTTACAGCCACCAAGGTCCTTCAGTCTTCAAATCACAACCTCCCTTCACTTCACCAAGGAGTAAGGATATCCATGCACCTGCACCTGCACCATCACCAGCATTTCTGTCAGGTCACCTGGATGTTATTCATCAATCATCAGTGCCCTCTCCTTCACCTAGAATTTCACCTCTAGGTTCATCATTGAAGAAGATGAAGACTCCACCACCAGCTTATACATTCGTTCTGCCACCTCCACCTCCTAATAAGGATTGCTTGTCAATGACTTGCTCAGAGCCCTTGACATATACACCTCCTGGATCACCTTGTGGTTGTGTATGGCCACTTCAAGTTAAACTCTGCATCAGTATTTCAATATACAAGTGCTTTCCTTTGGTTTCAGAGCTAGCTGAGGAAATTGCAGCAAGTGTTTTGCTGAACCATAGCCAAGTTCGCATTGTGGGAGCTGATGCAGCTAATCAGCAAGTAGAGAAAACCAATGTTCTCATAAACTTGGTACCTAAAGGAGTAAAATTTGATGATACAATGGCATTTTTAATATATAAGAAATTCTGGCACAGGGAGATTCTAATAGATGCTTCACTCTTTGGTGATTATGAAGTACTTTATGTTCATTATCCAGCATCTCCACCTTCAACTCCATCAGGTGCTTCTAGTATAGATGATGGGCCAAATCCTGGTCATGACAACAATGGAACGATAATGAAACCTTTAGGAGTAGATGTCTCAAAGAAGAAAAATGAAGGGACTAATGGAAGAATGATTTTTATAATTGTGCTGTCATCAATTACAGCTTTTGTTATATTCATTGGACTTGCTTGGCTGTGCTTGTTGAAATGCAGTTCCCGTGCTCATGAACATGAACAAGTTCCAGATAGTTTAATTTCATTCTCTTCAAAACAATCAATAGCAGGGGCTGCTAGGTCATTAACTCATGGGAGCATACCGGGTTCTGGATCAGGGTCATCTAATTCTGGAACAATAAAATATACAGGATCTGCTAAGATTTTTACTTTGAATGACTTAGAGAAAGCAACAAATAAATTCGATTCTTCAAGAATATTAGGAGAAGGAGGCTTTGGACTTGTTTACAAAGGTATTCTAAATGATGGGAGAGATGTAGCAGTGAAGATTCTCAAAAGAGATGATCAGCGTGGTGGCCGTGAATTCTTGGCAGAAGTTGAGATGCTTAGCCGCCTGCACCATAGAAATTTAGTTAAATTGATAGGTATATGCATAGAGAAACAGACTCGTTGCCTAGTCTATGAGCTTGTCCCTAATGGAAGTGTGGAATCTCACTTACATGGTGCTGACAAGGAAACTGATCCACTGGATTGGAATGCCAGGATGAGGATTGCACTTGGTGCAGCTCGAGCATTGGCTTATCTGCATGAAGACTCAAATCCATGTGTCATACATAGAGACTTCAAGTCCAGCAACATCCTGTTGGAATATGATTTTATACCCAAGGTTTCAGATTTTGGATTGGCTAGATCAGCACTGGATGAGGGAAACAAGCACATCTCCACACATGTCATGGGAACATTTGGCTACTTAGCTCCTGAATATGCAATGACTGGCCATCTTCTCGTCAAAAGTGATGTTTACAGTTATGGAGTTGTACTCCTTGAACTCCTAACTGGAAGAAAGCCAGTGGATTTATCACAACCACCAGGTCAAGAAAATCTTGTGACTTGGGTTCGTCCACTTCTCACAAGTAAGGAGGGTTTGCAGATGATCATAGACCCAGTTGTAAAGGCCAACATATCTGTTGATACTGTGCTAAAAGTTGCAGCAATTGCATCCATGTGTGTTCAACCAGAAGTCTCTCAACGTCCTTTCATGGGTGAAGTCGTTCAGGCCTTGAAGCTGGTATGCAGTGAGTTTGAGGAAACAAACTATACTAGATCAAGGAGTTCTCAAGAAGAAGGTCTTGTAACTAATGTGGAAAGGAAGTTTTCAGATGAAAGAGTGGATTTTTCAGAGTATCAAAAAACCTTTTCTGGCTATCAATCTAGTGAAGAAAAGGTACAATTATCAGCATCAGACCTGCTCAGTACTTCAGGCCAGGAATTTGAATCATTCAGGAGGCATTCTACTTCAGGGCCTCTGACTATTGGGAAGAAAAAGCATTTCTGGCAAAAGTTGAAAGGTTTGTCTAGAGGTAGCACCAGTGAACATGGATTTTCAACTAAACTATGGCCTGGATCCCATTAA 2583 0.4131 MRLQFIFLLIKLHLVVSTQQQFHEYTATKLLHSRARSHLSVAFPPSVSSSEVPSTIAHPPDESSSGVAASIAFPPSKSIDKAPTKKWTHSSVDSPISHHKHHYSITKNHNPTPGPTYPVQAPTYSHQGPSVFKSQPPFTSPRSKDIHAPAPAPSPAFLSGHLDVIHQSSVPSPSPRISPLGSSLKKMKTPPPAYTFVLPPPPPNKDCLSMTCSEPLTYTPPGSPCGCVWPLQVKLCISISIYKCFPLVSELAEEIAASVLLNHSQVRIVGADAANQQVEKTNVLINLVPKGVKFDDTMAFLIYKKFWHREILIDASLFGDYEVLYVHYPASPPSTPSGASSIDDGPNPGHDNNGTIMKPLGVDVSKKKNEGTNGRMIFIIVLSSITAFVIFIGLAWLCLLKCSSRAHEHEQVPDSLISFSSKQSIAGAARSLTHGSIPGSGSGSSNSGTIKYTGSAKIFTLNDLEKATNKFDSSRILGEGGFGLVYKGILNDGRDVAVKILKRDDQRGGREFLAEVEMLSRLHHRNLVKLIGICIEKQTRCLVYELVPNGSVESHLHGADKETDPLDWNARMRIALGAARALAYLHEDSNPCVIHRDFKSSNILLEYDFIPKVSDFGLARSALDEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLSQPPGQENLVTWVRPLLTSKEGLQMIIDPVVKANISVDTVLKVAAIASMCVQPEVSQRPFMGEVVQALKLVCSEFEETNYTRSRSSQEEGLVTNVERKFSDERVDFSEYQKTFSGYQSSEEKVQLSASDLLSTSGQEFESFRRHSTSGPLTIGKKKHFWQKLKGLSRGSTSEHGFSTKLWPGSH. 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11772 860 MobiDBLite consensus disorder prediction 127 148 - -
Seca4g11772 860 ProSitePatterns Protein kinases ATP-binding region signature. 477 499 IPR017441 GO:0005524
Seca4g11772 860 SUPERFAMILY Protein kinase-like (PK-like) 446 744 IPR011009 -
Seca4g11772 860 Gene3D Transferase(Phosphotransferase) domain 1 547 771 - -
Seca4g11772 860 MobiDBLite consensus disorder prediction 127 141 - -
Seca4g11772 860 MobiDBLite consensus disorder prediction 335 359 - -
Seca4g11772 860 Gene3D Phosphorylase Kinase; domain 1 444 546 - -
Seca4g11772 860 Pfam Protein tyrosine and serine/threonine kinase 474 744 IPR001245 GO:0004672|GO:0006468
Seca4g11772 860 ProSitePatterns Serine/Threonine protein kinases active-site signature. 593 605 IPR008271 GO:0004672|GO:0006468
Seca4g11772 860 FunFam receptor-like serine/threonine-protein kinase ALE2 444 546 - -
Seca4g11772 860 MobiDBLite consensus disorder prediction 44 61 - -
Seca4g11772 860 FunFam Receptor-like serine/threonine-protein kinase ALE2 547 764 - -
Seca4g11772 860 MobiDBLite consensus disorder prediction 44 114 - -
Seca4g11772 860 ProSiteProfiles Protein kinase domain profile. 471 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11772 860 PANTHER OS01G0750732 PROTEIN 199 765 - -
Seca4g11772 860 MobiDBLite consensus disorder prediction 82 100 - -
Seca4g11772 860 CDD STKc_IRAK 477 745 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11772 Seca-Chr4 258086753 258092864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11772 204 855 Receptor kinase-like Gene Family AT5G56890 59.607 0.0 745
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Seca4g11772 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11772 - - gmx:100814040 1384.78