Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11770 ATGGCTTCTACTACTTCTTCTGCTAATGCTTCTTCTTCCTCTGTAGCAGTTACAGTACCTCTCAAGAAATATGAGGTTTTTATCAGCTTTAGAGGTGAGGACACTCGCGCCAACTTCACTAGTTTTCTTCATGCTGCTTTGTGTAGAAACTACATCGAAACATACATAGACTACAGGATCCAAAAAGGAGAGGAGGTATGGAAAGAACTTGTGAAAGCAATCAAAGAGTCCAGTATCTCTTTGGTTGTGTTCTCAGAAAACTATGCGTCTTCAACGTGGTGCTTGAATGAACTGCTAGAAATAATGGAGTGCAGGAAAAATGGACATCAAGATGTTATTCCTGTCTTCTACAAAACAGAGCCATCACACGTGCGGAAACAGAGCGGGAGTTACCAAACAGCGATGTCAAAACACAAGAAGCAGGGCAAGGACAAGATTCAAAAATGGAAAGATGCACTCCTTGAAGCAGCCAATTTATCTGGCTTCGATTCTCATAGATACAGGGCTGAATGTGACCTGATTGAGGACATCATCAAAGCAATATTGCAAAAACTAAATCACAAGTATACAAATGAACTTGGAGGCCTTTATATATTTGATGAAAACTTTTCTCACGTTGAGTCTTTATTGAGAATTGATTCAAAAGAAGTTCGAATGATTGGAATTTGGGGCATGGGAGGGATAGGAAAGACAACCCTTGCAGCTGCTATTTTTCACAAGGTCTCTCCCCAATATGATGGCAGTTGCTTCTTAGAAAATGTGACAGAAGAATCAAAAAGGCATGGACTCAATTACATATTCAGTAAACTTCTTTCTATGTTACTAATGGAAGATCTTTGTGTTGTTACCCTCAAAGTAATACCCTCTACTGTTATAAGAAGACTCAAACATATGAAAGCTTTGATTGTACTAGATGATGTGAATACTTCAGAACTTGTAGAAAACTTGGTTGGAGTAGGGCGTGACTGGTTAGGAGCTGGTAGCAGAGTCATTATAACAACCAGAGATAAGCATGTGCTAAGTAAAGGAGTTGATGAAATTCATGAAGTCAAGGAAATGAACTTTGAAAACTCCCTAAGGCTTTTCAGCTTAAATGCTTTTAACAAAACTCATGTGGAACAGGGATATGAGGAGGCATCAAAGAGAGCAATTGTCTATGCCAAAGGCATCCCCTTAGCTTTAAGAGTATTGGGATCATTTCTTCGTTCCAAAAGTGAACAAGAATGGGACAGTGCACTGGCTAAATTAAAGAAGATTCCCAATGCAGAAATTCAGAAAGTGTTGAGATTGAGCTATGATGGATTAGATGATACAGAGAAAAACATATTTCTAGACATTGCTTGCTTTTTTAAAGGGAACGAAAGAAAGAAAGTAACAAAAATACTAAATGCTTGTGGCTTCTTTGCAGATATAGGGATAAGAAACCTTTTAGACAAGGCTCTTATAAGGGATTCAGATAATTTCATAGAAATGCATGGCTTAATACAAGAAATGGGCAGGGAAATAGTTCGTGAGGAATCTATTAAGAATCCAGGACAACGCAGTAGGTTGTGGGACCCTGAGGAAGTTTGTGATGTATTGACAAATAATAGAGGTACTAAGGCAGTTGAAGGCATAGTTTTAGATATGACTAAAATTAAGCATATAAATTTAAGCTCCAAAGCATTCAAGAAGATGCCAAACTTAAGGATACTTGTTTTTAAGGACTTCAATGGGAACTTTAGGAGAATTAATTCTGTGTACCTCCCAATGGGTCTTCACTCATTGCCTAAAAACTTAAGATATTTTGGATGGGATGGATATCCATTGAAGTTCTTGCCTCCAACTTTTTGTCCTGAGATGCTTGTCGAGCTTTCCTTGCAAGACAGCAATGTGGAAAAACTTTGGAATGGAGTACAGAATTTGCCAAATTTGGAGATACTTGACCTCAATGGCTCCACACGCTTGATAGAGTGTCCAAATTTATCTCGTGCCCCAAATATTAAACATGTGAACCTGTCTCATTGTGAAAGATTGCCTTTCATTGATCCATCGATTTTCTCTCTCCAGAAGCTTGAAGTTTTAAATGTGGGAGCGTGCACGTCACTTAAGAGCCTTTGCAGCAGTAGTTGTCCACCATCTCTCCGAAGTGTCTATGCCTTGGGTTGCATCAATCTCCAAGAGTTCTCAGTCACATTATTAATGCCTAGCGCAACTGGCATGTATTTGAATTTTGGAGGATCAGGTTTGAATGAACTTCCATCATCAATTTTGCATATAAGAAATCTTGAAAACTTTTCTTTTCCTATTAGTGATGGCCTCATGGATCTCCCTGAAAATTTTGCCTATAAAATTACGCTTTGTGATCCTTGGAACTATGAATGTGACAGATTTATCACCTTACGTAACATACTGCCTAGCCCTGGCTTCCGAAGTGTAAGACGTTTAGTTTTTACCTATTGTTATAACTTGATTGAACTCCCAGACAACATCTCCTTGTTATCATCATTAGAGTCTTTAGTACTACTTTATTGTGCTATCATAACCTTGCCCCAAAGCATCAAGTATCTTCCATGTCTCAAAACTCTTGAAGTTGGTGAATGTGAAATGATTCAATCTATACCTTCACTTCCACAGTCCATCCAATGCTTCCATGTCTGGAACTGTGAATCTCTTCAGACAGTGAGTGAACCATTTGAGAAACCTAATTGTACTTTTCTTCTCTTTAATTGCATAAAATTGGATCCACAATTATATGACATTATTTTGAAAAGTATTGAACTTGGAGCAAATCTAGATTCATTCTTGGATCATGATCATTCATATACATCAAGCAGCAGTGCTTTGATTTACCACTTCTTACCAGTTATAAGTGGCAAAGAAGTTGGAGTTTGGTTCCATTACCATTCTATAGAGCCTTTTGTCACTATTGATGAACTTCCACTTAATTTGTTGGGTATTGTCTTTTACTTGGTTGTTTCTCAAGTCCAATCATGCTACATTGGATATGGTGGATGTTTTGGATGTGAGTGCTACTTGGAAAGTAGTGGAGGTGAAAAGATCAATATAACAAGTTTCTTTGTAGATAAATCTTCCTTGATTAATACTCTTCAGACTTCACTCGAAATGATGTGTGATCATGTGGTATTATGGTATGATGAACAATGTTGCAAGCAGATAATGGAGACGATTAAAGGCATCAATGACATAAGCAATGGTTACAATCCAATGCTTACATTTGAATTCTTCGCTCAAAATAGATTTGGAGAAGAAGTAGCAATAAAAGAGTGTGGGTTTCGCTGGATATATCCCTCGGAAGATCAAAATGTGTCTGAATTTGATGAGCAAGAAGAAACAGTTCCTTCAACAGAGAAATTTAAGCAACGTGTCTTTGGAACTCCTTCCAATCAAGAAACAGGAGACTTGAGTCATTTACTTGAAGAACTTTTGCATATTGGATTTGGTGGAGACCTTATGTAA 3459 0.3773 MASTTSSANASSSSVAVTVPLKKYEVFISFRGEDTRANFTSFLHAALCRNYIETYIDYRIQKGEEVWKELVKAIKESSISLVVFSENYASSTWCLNELLEIMECRKNGHQDVIPVFYKTEPSHVRKQSGSYQTAMSKHKKQGKDKIQKWKDALLEAANLSGFDSHRYRAECDLIEDIIKAILQKLNHKYTNELGGLYIFDENFSHVESLLRIDSKEVRMIGIWGMGGIGKTTLAAAIFHKVSPQYDGSCFLENVTEESKRHGLNYIFSKLLSMLLMEDLCVVTLKVIPSTVIRRLKHMKALIVLDDVNTSELVENLVGVGRDWLGAGSRVIITTRDKHVLSKGVDEIHEVKEMNFENSLRLFSLNAFNKTHVEQGYEEASKRAIVYAKGIPLALRVLGSFLRSKSEQEWDSALAKLKKIPNAEIQKVLRLSYDGLDDTEKNIFLDIACFFKGNERKKVTKILNACGFFADIGIRNLLDKALIRDSDNFIEMHGLIQEMGREIVREESIKNPGQRSRLWDPEEVCDVLTNNRGTKAVEGIVLDMTKIKHINLSSKAFKKMPNLRILVFKDFNGNFRRINSVYLPMGLHSLPKNLRYFGWDGYPLKFLPPTFCPEMLVELSLQDSNVEKLWNGVQNLPNLEILDLNGSTRLIECPNLSRAPNIKHVNLSHCERLPFIDPSIFSLQKLEVLNVGACTSLKSLCSSSCPPSLRSVYALGCINLQEFSVTLLMPSATGMYLNFGGSGLNELPSSILHIRNLENFSFPISDGLMDLPENFAYKITLCDPWNYECDRFITLRNILPSPGFRSVRRLVFTYCYNLIELPDNISLLSSLESLVLLYCAIITLPQSIKYLPCLKTLEVGECEMIQSIPSLPQSIQCFHVWNCESLQTVSEPFEKPNCTFLLFNCIKLDPQLYDIILKSIELGANLDSFLDHDHSYTSSSSALIYHFLPVISGKEVGVWFHYHSIEPFVTIDELPLNLLGIVFYLVVSQVQSCYIGYGGCFGCECYLESSGGEKINITSFFVDKSSLINTLQTSLEMMCDHVVLWYDEQCCKQIMETIKGINDISNGYNPMLTFEFFAQNRFGEEVAIKECGFRWIYPSEDQNVSEFDEQEETVPSTEKFKQRVFGTPSNQETGDLSHLLEELLHIGFGGDLM. 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11770 1152 Gene3D - 21 182 IPR035897 -
Seca4g11770 1152 FunFam Disease resistance protein (TIR-NBS-LRR class) 21 187 - -
Seca4g11770 1152 SMART till_3 23 159 IPR000157 GO:0007165
Seca4g11770 1152 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 446 IPR027417 -
Seca4g11770 1152 SUPERFAMILY L domain-like 540 902 - -
Seca4g11770 1152 Gene3D Ribonuclease Inhibitor 506 732 IPR032675 -
Seca4g11770 1152 Gene3D Ribonuclease Inhibitor 734 912 IPR032675 -
Seca4g11770 1152 PRINTS Disease resistance protein signature 633 649 - -
Seca4g11770 1152 PRINTS Disease resistance protein signature 219 234 - -
Seca4g11770 1152 PRINTS Disease resistance protein signature 387 401 - -
Seca4g11770 1152 PRINTS Disease resistance protein signature 294 308 - -
Seca4g11770 1152 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 757 IPR044974 GO:0006952
Seca4g11770 1152 Pfam Leucine Rich Repeat 615 633 IPR011713 -
Seca4g11770 1152 SUPERFAMILY Toll/Interleukin receptor TIR domain 22 162 IPR035897 -
Seca4g11770 1152 Pfam NB-ARC domain 208 431 IPR002182 GO:0043531
Seca4g11770 1152 Pfam TIR domain 23 191 IPR000157 GO:0007165
Seca4g11770 1152 Gene3D - 353 436 IPR042197 -
Seca4g11770 1152 Gene3D - 183 350 IPR027417 -
Seca4g11770 1152 SUPERFAMILY "Winged helix" DNA-binding domain 423 527 IPR036390 -
Seca4g11770 1152 ProSiteProfiles TIR domain profile. 22 185 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11770 Seca-Chr4 258066478 258071321 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11770 22 856 WRKY Transcription Factor Family AT4G12020 32.744 5.39e-106 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11770 - - gmx:100783388 1325.84