Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11768 ATGGCTATGGCTTCTACTTCTTTTGCTTTTTCATCTGTTGCTGTTACCGTACCTTTCAAAAAATATGATGTCTTCATCAGCTTTAGAGGTGAGGATACGCGCCCCAGCTTCACGAGCTTTCTTCATGATGCTTTGTGCAGAAAATACATCGAAACATACATAGACTACAGGATCGAAAAAGGAGAGGAGGTATGGGAAGAACTTGTGAAAGCAATCAAAGAGTCCAGTATCTCTTTGGTTGTGTTCTCAGAAAACTATGCGTCTTCAACGTGGTGCTTGAATGAACTGCTTGAAATAATGGAGTGCAGGAAAAATGGACATCAAGATGTTATTCCTGTCTTCTACAAAACAGAGCCATCACACGTGCGGAAACAGAGCGGGAGTTACCAAACAGCGATGGCAAAACACAAGAAGCAAGGCAAAGACAAGATTCAAAAATGGAAAGATGCTCTCTGTGAAGTAGCCAATTTATCTGGCTTCGATTCTACTGCTTACAAGACTGAACTTGACTTGATTGAAGACATCACCAAAGAAGTTTTACAAAAATTGAATTACAAGTACACAAGTGAACTTAGATGCCTGTTCATACCCAATGAAAACTATTCACGCATTGAATCTTTAATAAGAACTGATACAGAAAAAGTTCGAATCATTGGAATTTGGGGCATGGGAGGCATTGGTAAGACAACCCTTGCTGCTGCTGTTTTTCAGAAGGTCTCTTGTGAATATGAAGGTAGTTGCTTCTTAGAAAATGTGACAGAAGAATTAAAAAGGCATGGACTCAATTACATATGCAACAGACTTTTTTCTAAGTTACTAAGGGAAGATCTTGGTATTGACACTCCCATGGTAGTGCCCTCTAATGTGATGAGAAGACTCAGACGTATGAAAGCTTTCATTGTACTTGATGATGTGAATTCCTCAAAACTTCTAGAAAACTTGGTAGGAGTTAGGCGTGATTGGCTAGGAGCTGGTAGCAGAGTCATTGTGACAACCAGAGATAAGCAAGTGCTTATAAGTGGAGGGGTTGATGAAATTCATGAAGTCAAGAAATTGAACTTTCAAAAATCCCTTCGACTTTTCAGCTTGAATGCCTTTAACCAAACATATCCTGGAAAGGGATACGAGGAGCTCTCACAAAGAGCAATTGCTTATGCCAAAGGCAACCCTCTAGGCTTGAAAGTTCTGGGATCATTTCTTCGTTCCAAAAGTGAAATAGAATGGGATAGTGCACTATCTAAGCTCAAGGAGTTTCCCAATGCAGAAATCCAGGAAGTGTTGAGGTTGAGTTATGATAGCTTAGATGATATTGACAAAAATATATTTCTAGATATTGCATGCTTTCTTAAAGGCTGTAGAAGAAACAAAGTAACAAAAATATTAAATGCATGTGGTTTCTTTGCAGATAATGGTATAAGAAACCTTTTAGACAAGGCTCTTATAACTATTGATTTATATAATCGTATACAAATGCATGGCTTGTTACAAGAAATGGGTAGGGAAATTGTTCGAGAAGAACCTACTGAAAATCTTGGAGGACGCAGTAGATTGTGGGATCCTAAGGAAGTTTGTGATGTATTGATAAATAATAAGGGAACTGGTGCAGTTGAAGTCATATGGTTAGATATGACTCAAATTGCACCCATAAATTTAAGCTCCGAAGCATTTGAAATAATGCCAAACCTAAGGTTACTTGCTTTCCAAGGCATCAAATGGGACTCTAAGATAATTAACTCTGTGTACCTTCCAAAGGGTCTTAAATTATTGCCTAAAAACTTAAGATATTTTGAGTGGGATGGATATCCATCAAAGTCTCTGCCACCAACATTTTGTCCTGAGAAGCTTGTTGAGCTCTCCCTGCCATACAACAATGTGGAAAAACTTTGGGATGGAATACAGAATCTGCCAAATTTAGAGAGAATTGACCTTCGTTGCTCCACACACCTGAAAGAGTGTCCAAATCTGTCTCATGCCCCAAATGTTAAATTTGTAGGACTCAGCCATTGTGAAAGCTTGAATCATGTTGATTCATCAATTTTATCTCTCCAGAAGCTTGAAGTTTTAAGTGTGAGTGGATGCACATCACTTAAGAGCCTTTGCAGTAACTCTTGTTCACCGTCTCTCCGAGAATTGTATGCTGCACGTTGCCCCAATCTCCAAGAGTTCTCAATCACATTAATGCCTCAAGATCCTTCCACAACTCCTTTTTGTTTGAATTTAGGAGGCTCAGGTTTGATTGAACTACCACCATCCATTTTGCATATGAAAAATATTGGAAAGTTTTCTTTTCCCATCAGTGACAGTCTTACGCACCTTCCTGTAAACTTTGCCAACGAAATTACACTTTCTGACTCAAGAAAACAAACAAGTGACACTTTAATCACCTTAAGTAAAGTTCTACCAAGCCCTGGCTTCCACAGTGTGAGACGTTTATTTTTTGACTTTTGTCATAGTTTGTCAGAACTCCCAGACAATATCTCTTCTTTATCATCATTAGAGTATTTAAGACTATATGATTGTACCATCATAAGCTTGCCTAAAACCATTGAGTATCTTCCACGACTTCAACATCTTGAAGTTGATGAGTGTAAAAAGCTTCAATCTATACCTGCACTTCCACAGTCAATTCAATGCTTCCATGCATGGAACTGTGAATCTCTTGAGGAAGTGTTAAGTTCAATGACAGAACCATCCATGAAACACGAGTGTACTTTTCTGTTCCCTAACTGTGTAAATTTGAATGAAGATTCATACCATGCCATTCTCAAAGATGCCACTGTTGGGATTGAACTTGGAGCAAAACCATTGTCAGAAGTAGTATTAGAAGATCATGAGGATGATGATGAAGAAACATATGCATTTGAAACAGTAAGGAGTGGTAAAGTTTGCTACTTTTTACCAGCTAGAAGTGACAAACTTCGAGAATTGTTTAGTTACCACTCTACACAAGCTCTATTCACTGTTGAACTACCCCCTAATCTGGTGGGTTTGGTTTTCTACTTGGTTCTTTCTCAAGTCCAATCATGCCACATTGGATATGGTGGAAGTTTTGGATGTGAATGCTGCTTGGAAACTAGTTGGGATGAAGAGATCAATATAACAAGTTTCTTTGTAGCTGAAAGCATCTGGTTCAATTATTATACATCATTTGAAATGATGTCAGATCATGTGTTTTTATGGTATGATGCAGAGTGTTGCAAGCAGATAATGGAAGCCATTAAAGAAAGTAGAAAAGTCATCAATCACAGGAGAGCCAGATACAAGGCAAAGATCACATTTGAATTCTTTGCTCAAAATATGGATAATGAGGAAGAAATAATAAAAGAGTGTGGGTTACGCTGGATATATCCCTCAGAAGATCAAATTGTGGAGAAGGGAGGAGGGTGTAAATCCAAGAGAAGTAGGGAAGATCATGAATTAGAAGCCAGTAAAATCCAAAATAGAGATGTGGGCTCTGAATCTGATAAACAAGAAGAAATGATTCCTCCAACAAAGAAACTAAAACAAATATTTGGAACTCCCTCCAATCTGGAATCAAATCAAGAAATGGAAGACTTGAGGCGTTCACTTGAAGAACTCTTGCATATTGGATTTTGTGGAAACCTCTTGTAA 3612 0.3821 MAMASTSFAFSSVAVTVPFKKYDVFISFRGEDTRPSFTSFLHDALCRKYIETYIDYRIEKGEEVWEELVKAIKESSISLVVFSENYASSTWCLNELLEIMECRKNGHQDVIPVFYKTEPSHVRKQSGSYQTAMAKHKKQGKDKIQKWKDALCEVANLSGFDSTAYKTELDLIEDITKEVLQKLNYKYTSELRCLFIPNENYSRIESLIRTDTEKVRIIGIWGMGGIGKTTLAAAVFQKVSCEYEGSCFLENVTEELKRHGLNYICNRLFSKLLREDLGIDTPMVVPSNVMRRLRRMKAFIVLDDVNSSKLLENLVGVRRDWLGAGSRVIVTTRDKQVLISGGVDEIHEVKKLNFQKSLRLFSLNAFNQTYPGKGYEELSQRAIAYAKGNPLGLKVLGSFLRSKSEIEWDSALSKLKEFPNAEIQEVLRLSYDSLDDIDKNIFLDIACFLKGCRRNKVTKILNACGFFADNGIRNLLDKALITIDLYNRIQMHGLLQEMGREIVREEPTENLGGRSRLWDPKEVCDVLINNKGTGAVEVIWLDMTQIAPINLSSEAFEIMPNLRLLAFQGIKWDSKIINSVYLPKGLKLLPKNLRYFEWDGYPSKSLPPTFCPEKLVELSLPYNNVEKLWDGIQNLPNLERIDLRCSTHLKECPNLSHAPNVKFVGLSHCESLNHVDSSILSLQKLEVLSVSGCTSLKSLCSNSCSPSLRELYAARCPNLQEFSITLMPQDPSTTPFCLNLGGSGLIELPPSILHMKNIGKFSFPISDSLTHLPVNFANEITLSDSRKQTSDTLITLSKVLPSPGFHSVRRLFFDFCHSLSELPDNISSLSSLEYLRLYDCTIISLPKTIEYLPRLQHLEVDECKKLQSIPALPQSIQCFHAWNCESLEEVLSSMTEPSMKHECTFLFPNCVNLNEDSYHAILKDATVGIELGAKPLSEVVLEDHEDDDEETYAFETVRSGKVCYFLPARSDKLRELFSYHSTQALFTVELPPNLVGLVFYLVLSQVQSCHIGYGGSFGCECCLETSWDEEINITSFFVAESIWFNYYTSFEMMSDHVFLWYDAECCKQIMEAIKESRKVINHRRARYKAKITFEFFAQNMDNEEEIIKECGLRWIYPSEDQIVEKGGGCKSKRSREDHELEASKIQNRDVGSESDKQEEMIPPTKKLKQIFGTPSNLESNQEMEDLRRSLEELLHIGFCGNLL. 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11768 1203 MobiDBLite consensus disorder prediction 1126 1181 - -
Seca4g11768 1203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 445 IPR027417 -
Seca4g11768 1203 SUPERFAMILY L domain-like 538 896 - -
Seca4g11768 1203 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 723 IPR044974 GO:0006952
Seca4g11768 1203 SMART till_3 21 157 IPR000157 GO:0007165
Seca4g11768 1203 MobiDBLite consensus disorder prediction 1126 1163 - -
Seca4g11768 1203 Gene3D - 19 189 IPR035897 -
Seca4g11768 1203 SUPERFAMILY Toll/Interleukin receptor TIR domain 20 160 IPR035897 -
Seca4g11768 1203 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 185 - -
Seca4g11768 1203 SUPERFAMILY "Winged helix" DNA-binding domain 422 527 IPR036390 -
Seca4g11768 1203 Pfam TIR domain 21 189 IPR000157 GO:0007165
Seca4g11768 1203 Gene3D - 195 344 IPR027417 -
Seca4g11768 1203 Pfam NB-ARC domain 205 436 IPR002182 GO:0043531
Seca4g11768 1203 PRINTS Disease resistance protein signature 217 232 - -
Seca4g11768 1203 PRINTS Disease resistance protein signature 292 306 - -
Seca4g11768 1203 PRINTS Disease resistance protein signature 386 400 - -
Seca4g11768 1203 PRINTS Disease resistance protein signature 680 696 - -
Seca4g11768 1203 Coils Coil 1176 1196 - -
Seca4g11768 1203 Gene3D Ribonuclease Inhibitor 528 733 IPR032675 -
Seca4g11768 1203 Gene3D Ribonuclease Inhibitor 736 915 IPR032675 -
Seca4g11768 1203 Gene3D - 351 435 IPR042197 -
Seca4g11768 1203 ProSiteProfiles TIR domain profile. 20 183 IPR000157 GO:0007165
Seca4g11768 1203 Pfam Leucine Rich Repeat 614 633 IPR011713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11768 Seca-Chr4 258045909 258050783 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11768 20 858 WRKY Transcription Factor Family AT4G12020 31.375 2.70e-103 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11768 - - gmx:100783388 1375.92