Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11767 ATGGCTATTGCTTCTACTTCTTCTTCTTCTTCTTCCGCAGCCTCTGTCGCTTTTACAGCACCTTTCAAAAAGCATGATGTTTTCATCAGCTTTAGAGGTGAGGACACACGTGACAATTTCACAAGTCATCTTCATGCTGCTTTGCGCCGAAGCTATATTGAAACCTACATAGACTACAGAATCGACATAGGAGAGGAGGTTTGGGCAGAACTTGTGAAAGCGATCAAAGACTCCAGTGTCCTTTTGGTTCTGTTCTCAGAAAACTATGCGTCTTCAACATGGTGCTTGGACGAACTCGTAGAAATAATGGAGTGCAAGAAAAATGGACAAGGTCAAGATGTTATTCCTGTGTTCTACAAAATAGAGCCATCACAGGTACGGAAGCAGACGGGGAATTACGACACAGCGTTCGCTAAACACAAGCAGGATATGAAGCAGAGCGAGGAGGAGAAGATGCAAAAGTGGAAGGATGCTCTTTGCGAAGCAGCCAATTTATGTGGCTTCCATTCTCGTCTATACAGGACCGAATTTGACCTGATTGAAGACATCACCAAAACAGTTTTGCGAAAACTAAATCACAAGTATACAAATGAACTTGGAGGCTATTTTATATCTGATGAAAACTTTTCACACATTGAATCTTTATTAAGAATTGATTCAAAACAAGTTCAAATCATTGGAATTTGGGGCATGGGAGGCATAGGCAAGACAACTCTTGCTGCAGCTATTTTTCATAAGGTCTCTTCTCAATATGAAGGTAGTTGCTTCTTAGAAAATGTGACAGAAGAATCAAAAAAGCATGGACTTGGTTTCATATGCAATAGACTTCTTTCTACATTACTAATGGAAGATCTTCATATCGCCACTCTCAAAGTGATACCCTCTAATGTTATCAGAGGACTTAGTCGTATGAAAGCCTTTGTTGTACTAGATGATGTGAATGCTTCAGAACTTCTAGAAAACTTGGTTGGAGTATGGCGTGATTGGCTAGGAGCTAGTAGTAGAGTCATTGTGACGACCAGAGATAAGCATGTGCTTATAAGTGGAGGAGTTGACAAAATCCACGAAGTCAAGGAAATGAATTTTCAAAACTCCCTTCGACTTTTCTGCTTGAATGCTTTTAACGAAACTCATCCCAAACAAGGATACGATGAGGTATCAAAAAGAGCAGTTGATTATGCCAAAGGCATCCCTCTAGCATTGAAAGTTTTGGGATCATTTCTTCGTTCCAAAAGTGAAAAAGAATGGGATAGTGCACTGACTAAATTAAAGAAGATTCCCAATGCAGAAATTCAGAAAGTGTTGAGATTGAGTTATGATGGATTAGATGATAAAGAGAAAAACATATTCCTAGACATTGCATGCTTTTTTAAAGGGCGTGGAAGAGACAATGTAGAAAAAATATTGAATGCTTGTGGTTTCTTTGCAGATATAGGGATAAGAAACCTTATAGATAAGGCTCTTATAAGTGTTGATATGAATAATTGTATAGAAATGCATGACTTGATCCGAGAAATGGGCAGGGAAATTGTTCGAGAAGAATCTATTAAGAATCCTGGACGACGCAGCAGATTGTGGGATCCAGAGGAAGTTTGTGATGTATTGACAAATGATAGGGGAACTGGTGAAGTTGAAGCCATATTTTTAGATATGACTCAAATTACTTACATAAATTTAAGCTCCAAAGCATTCAAAAAGATGCCGAACCTAAGGTTAATTTCTTTTGAAGCCTTTAACCAGGATTTTAAGAGAATTCATTCTGTGTACCTTCCTAGGGGTCTCGACCTATTGCCTAAAAATTTAAGATATTTTGGATGGGATGGATATCCATTGAAGTCTCTACCATCAACTTTTTGTCCTGAGATGCTTGTTGAGCTTTCCCTGCCATATAGCAATGTGAAAAAACTTTGGAATGGTGTACAGAATTTGCCAAATTTAGAGATGCTTGACCTCAATGGCTCCAGACACTTGAGGGAGTGTCCAAATTTGTCCCGTGCCCCAAATCTTAAATATGTAAAACTCAGTAATTGTGTAAAATTGCCCTCTGTTGATCCATCAATTTTCTCTCTCCAAAAACTTAAAGTTTTAAATGTGGGAGGGTGCATGTCACTTAAGAGCCTTGGCAGCAAAACTTGTTCACCATCTCTCCAAGGATTGTATGCCTGGGGTTGCTACAATCTCCAAGAGTTCTCTGTCACATTAATGCCTACCACAACTCGTTTGTGTTTGAATTTAGGAGGGTCAGGTTTGAATGAACTTCCATCATCAATTTTGCAGATAAAAAATCTTGAAAACTTTTCTTTTCCCATAAGTGATGGTCTCATGGATCTCCCTGAAAACTTTGCCCCAAAAATTACACTTTCTGGATCAGGGAAGCATGAACGTGACACTTTTTTCACCTTGCATAAAGTACTGCCTAGCCCTGGCTTTCGGAGTACAAGATGTCTAGTTTTTGACTTTTGTCATAACTTGTCTGCACTCCCAGATAACATCTCCTTGTTATCATCATTACAGTACTTAATACTAGTTGATAGTGCTATCATAAGCTTGCCAGAAAGCCTGAAGTATCTTCCACGACTCAAACTCCTAGAAGTTAATGGATGTAAAATTCTTCGATCTATACCTACACTTCCACGGTCCATTCAATGCTTCCATGTCTGGAACTGTGAGTCTCTTCAGACAGTGTTGAGTTCAACAAGTGAACCATCCGAAAAATCCAAGTGTACTTTTATGCTCCCTAACTGCATAAAATTGGGACTACATTCATATAACACCATTTTGAAAGATGCTATTGCTAGGATTGAACATGGAGCAAAACAACTTGCGACATTATTGAAAAATAAAGAAGATGCATCCTTGGATCATGATGATGATGAGGTATTATGTACATCAAGAAGTGGTAAAATTTGCTACTTTTTACCAGCCATCAGTGACAAAATTCGAGATTGGTTCCATTACCATTCTACACAATCTTTGGTCACTGTTGAACTTCCCTCCAATTTGTTAGGTTTCGCCTACTACTTGGTGCTTTCCCAAGTCCAATCATGCCACATTGGAGGCTATGGAAGTTTTGGAAGCAAATGCTACTTGGAAACAAGTTGGGGCGAAAGTATCTATATAACAAGTTTCTTTGTCGATGAAAATACCTTGCTTAATCCTGATACTTCATTTGAACTGATGTCAGATCATGTGCTTTTGTGGTATGATGCACAATGTTGCAAGAAGATAATGGAAGTGGTTAAAGAAAGAAAAGCCATTAATGACATGAGCACCACTTATAATCCAAAGCTTACATTTATATTCTTTGCTAAAACTCAATATGATGAAGTAGTAGTGATAAAAGAGTGCGGGATTCGTTGGATATATCCCTTAGAAGATCAAATTGTGAAGGAAGGAGGAAGGTGTAAATCCAAGAGAAGTAGGGAAATTTATGAATTGGAAACCAATAATGTAGTCCAAAACAGAGCTGAGCGATCGCAAGAAGAAAATGTTCCTCCAACAAAGAAACTCAAGCAACATGTGTTTAGAACTCCATCCAATCAACAAGTAGATCAAGAAATGGAAGACTTGAGGTGTTTACTTGAAGAACTCTTGCATATTGAATTTGGTCGAGACCGTATGTAA 3624 0.3844 MAIASTSSSSSSAASVAFTAPFKKHDVFISFRGEDTRDNFTSHLHAALRRSYIETYIDYRIDIGEEVWAELVKAIKDSSVLLVLFSENYASSTWCLDELVEIMECKKNGQGQDVIPVFYKIEPSQVRKQTGNYDTAFAKHKQDMKQSEEEKMQKWKDALCEAANLCGFHSRLYRTEFDLIEDITKTVLRKLNHKYTNELGGYFISDENFSHIESLLRIDSKQVQIIGIWGMGGIGKTTLAAAIFHKVSSQYEGSCFLENVTEESKKHGLGFICNRLLSTLLMEDLHIATLKVIPSNVIRGLSRMKAFVVLDDVNASELLENLVGVWRDWLGASSRVIVTTRDKHVLISGGVDKIHEVKEMNFQNSLRLFCLNAFNETHPKQGYDEVSKRAVDYAKGIPLALKVLGSFLRSKSEKEWDSALTKLKKIPNAEIQKVLRLSYDGLDDKEKNIFLDIACFFKGRGRDNVEKILNACGFFADIGIRNLIDKALISVDMNNCIEMHDLIREMGREIVREESIKNPGRRSRLWDPEEVCDVLTNDRGTGEVEAIFLDMTQITYINLSSKAFKKMPNLRLISFEAFNQDFKRIHSVYLPRGLDLLPKNLRYFGWDGYPLKSLPSTFCPEMLVELSLPYSNVKKLWNGVQNLPNLEMLDLNGSRHLRECPNLSRAPNLKYVKLSNCVKLPSVDPSIFSLQKLKVLNVGGCMSLKSLGSKTCSPSLQGLYAWGCYNLQEFSVTLMPTTTRLCLNLGGSGLNELPSSILQIKNLENFSFPISDGLMDLPENFAPKITLSGSGKHERDTFFTLHKVLPSPGFRSTRCLVFDFCHNLSALPDNISLLSSLQYLILVDSAIISLPESLKYLPRLKLLEVNGCKILRSIPTLPRSIQCFHVWNCESLQTVLSSTSEPSEKSKCTFMLPNCIKLGLHSYNTILKDAIARIEHGAKQLATLLKNKEDASLDHDDDEVLCTSRSGKICYFLPAISDKIRDWFHYHSTQSLVTVELPSNLLGFAYYLVLSQVQSCHIGGYGSFGSKCYLETSWGESIYITSFFVDENTLLNPDTSFELMSDHVLLWYDAQCCKKIMEVVKERKAINDMSTTYNPKLTFIFFAKTQYDEVVVIKECGIRWIYPLEDQIVKEGGRCKSKRSREIYELETNNVVQNRAERSQEENVPPTKKLKQHVFRTPSNQQVDQEMEDLRCLLEELLHIEFGRDRM. 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11767 1207 Gene3D - 196 352 IPR027417 -
Seca4g11767 1207 FunFam Disease resistance protein (TIR-NBS-LRR class) 22 193 - -
Seca4g11767 1207 Gene3D - 22 195 IPR035897 -
Seca4g11767 1207 Gene3D - 360 443 IPR042197 -
Seca4g11767 1207 Pfam TIR domain 24 197 IPR000157 GO:0007165
Seca4g11767 1207 PRINTS Disease resistance protein signature 300 314 - -
Seca4g11767 1207 PRINTS Disease resistance protein signature 641 657 - -
Seca4g11767 1207 PRINTS Disease resistance protein signature 225 240 - -
Seca4g11767 1207 PRINTS Disease resistance protein signature 394 408 - -
Seca4g11767 1207 Pfam NB-ARC domain 212 436 IPR002182 GO:0043531
Seca4g11767 1207 SUPERFAMILY L domain-like 499 897 - -
Seca4g11767 1207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 453 IPR027417 -
Seca4g11767 1207 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 732 IPR044974 GO:0006952
Seca4g11767 1207 SMART till_3 24 165 IPR000157 GO:0007165
Seca4g11767 1207 Pfam Leucine Rich Repeat 623 641 IPR011713 -
Seca4g11767 1207 SUPERFAMILY Toll/Interleukin receptor TIR domain 23 168 IPR035897 -
Seca4g11767 1207 Coils Coil 1180 1200 - -
Seca4g11767 1207 ProSiteProfiles TIR domain profile. 23 191 IPR000157 GO:0007165
Seca4g11767 1207 FunFam Disease resistance protein (TIR-NBS-LRR class) 361 443 - -
Seca4g11767 1207 Gene3D Ribonuclease Inhibitor 741 924 IPR032675 -
Seca4g11767 1207 Gene3D Ribonuclease Inhibitor 533 740 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11767 Seca-Chr4 258016062 258020656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11767 23 845 WRKY Transcription Factor Family AT4G12020 33.650 4.45e-112 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11767 - - gmx:100805490 1517.67