Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11765 ATGAACAACAACAACATCTCATCAAGAAATGGTAACAGCAGTACCGCCCAGGCTTGCGCGGCTTGTAAATACCAACGCAGGAAGTGCGCACCTGACTGCATTCTCGCACCTTATTTTCCTCACGATCGCCAACGCCAATTCCTTAACGCTCATAAATTATTTGGTGTCAGTAACATCACCAAAATCATCAAATACCTTGACCCTCCCCTTAAGGACCAAGCCATGCGCACCATCATTTTCCAATCTGATATGCGCGCTAACGACCCTGTTGGTGGTTGTTATAAATACATCCAAGACCTCCAAGCTCAGATCGATTACTACCGCGCCGAGCTCGACCTCGTCCTTCAACAACTCGCCATTGTCCGGGCCCAGGCCCAAGCCCAACAACTCCACCACCACCACCACCACCATGTCCATGCCAATTCTGATGTCGATGTCAATGTCATGAATGCTAATGCTGCACTCTATAATAACCCTAACCCTGCACCTTCCTCTCTCATTTCTGCCACGCCTCATTACCATTACCTTCAACAACAATTGCCACACCAGGATCAATACATTATGCTACATGAAAATAATAATTGCAACAACACCCCTCTGCAAGAACACATTAACACGTGGGCGATGCAGAACTCCATGTCTCTCTCATCTCTGTCACTGCACGGACAGAGTAGCAATGCAAGCGATGAGTTTGATCAGAAGCCAATGCTTGATTTACATTCAGATGAAAGAAACGATCAATTAGGGTTCGATTCTGGAGAATTAGTCCACCACAGGTGA 780 0.4667 MNNNNISSRNGNSSTAQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKYLDPPLKDQAMRTIIFQSDMRANDPVGGCYKYIQDLQAQIDYYRAELDLVLQQLAIVRAQAQAQQLHHHHHHHVHANSDVDVNVMNANAALYNNPNPAPSSLISATPHYHYLQQQLPHQDQYIMLHENNNCNNTPLQEHINTWAMQNSMSLSSLSLHGQSSNASDEFDQKPMLDLHSDERNDQLGFDSGELVHHR. 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11765 259 Coils Coil 97 117 - -
Seca4g11765 259 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 16 153 - -
Seca4g11765 259 ProSiteProfiles LOB domain profile. 17 118 IPR004883 -
Seca4g11765 259 Pfam Lateral organ boundaries (LOB) domain 18 113 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11765 Seca-Chr4 257998422 257999949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11765 17 242 AS2 family AT3G13850 49.339 1.49e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca4g11765 LOB 2.3e-35 No_clan