Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11761 ATGATGAAGGATTTGATGTTCCAAAAGCAGCAACAACAACAGCAACAGGTGGTGGAGGAGAACATGTCAAATTTGACTTCTGCATCTGGTGAAGCTAGTGTTTCCTCAGGCAACAGAACCGAAGTTGGTACAAGTTACCCTCAACAATACTTGGCTCCACCACCAACTCATGAGTCTCAACCAGCAAAGAAAAAGAGAAACCTTCCTGGCAACCCAGACCCAGATGCTGAGGTTATTGCCTTGTCCCCCAAGAGTCTTCTGGCCACAAATAGATTCATTTGTGAGATCTGTAACAAAGGGTTTCAAAGAGATCAGAATCTTCAACTTCATAGAAGAGGGCATAATTTGCCATGGAAGCTGAAGCAGAGAACAAGTAAAGAGGTGAGGAAGAAGGTGTATGTGTGCCCAGAACCAACTTGTGTGCATCATGACCCATCAAGGGCCCTGGGGGACCTAACTGGGATTAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGAAAAATGTTCCAAGAGGTATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAGACCTGTGGCACAAGGGAGTACAGATGTGACTGTGGAACTCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCTTTCTGTGATGCATTAGCAGAGGAGGGTGCAAGAGCTATCACAGCCACAGCCAACCCACTTTTACCCTCACAACAACCTTCATCCTCTCACCACATGATAAATCTCCAAACCCAATTCAACCCCCAAGACCTCCAAGCTAATTTCCCATTGAAAAAGGAGCAACAGCAAAGTTTCAACCTTGGTTCAGAAATACCCCCTTGGCTTGGCCCACCCACTGTTGATCATCTCTCCTCATCCTCATCTATCTTCTCCCCAACCCCAAGATTGGACCAAGAATTTTCACAAACACATCATCAACAACAAAACCCTAACCCTAGCCTTGGTCCCACTCTCCCTCCCTACCAAACAGTGCCTTCCCCACACATGTCAGCTACAGCTTTGCTGCAGAAAGCAGCTCAGATGGGTGCAACCATGACCAGAACTGGTTCCTCACCAGCCATGATCAGGACCCACCAACAGGCTCACGTGTCTGCTGATTCTGCCAACAATTCCAGTGGTAATTTTGGTTTGAACTTGTCCTCACGTGAAGACCAGATGACTCCCAGCACTTCAACAACAACAACAACTTCTAATACAGGGTTTGGCCATGGTTTATCATCACCTTTTGGGAATAAAACTGCACCCTCTTCTTCTGCTTCTGGTGTTCCTCCATCCCTTCTTCATGATGTTCTCAACTCTTTCTCTTCTCCTTCTGGCTTTGAAGGAACCCCTTTTGAGGACCCATTTGGTGGCATTATGAATTCAAAGAAAGATCAAAACTTGCATGACACCTTTTCCAAAACAACCACAGCCACACACCTTGCCGGCGCCGCCGATGAGGGCGGCGGCGGCGGCGGGGGAAATGAAGGGTTGACGAGGGACTTTTTGGGTCTTAGGCCCCTCTCTCACAGTGATATTCTAAGCATGGCTGGTATTAGAAACTGCATGAATGATCAACAAAACCAATCTCAAAAGCCATGGCAAGGTTAG 1611 0.4699 MMKDLMFQKQQQQQQQVVEENMSNLTSASGEASVSSGNRTEVGTSYPQQYLAPPPTHESQPAKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEEGARAITATANPLLPSQQPSSSHHMINLQTQFNPQDLQANFPLKKEQQQSFNLGSEIPPWLGPPTVDHLSSSSSIFSPTPRLDQEFSQTHHQQQNPNPSLGPTLPPYQTVPSPHMSATALLQKAAQMGATMTRTGSSPAMIRTHQQAHVSADSANNSSGNFGLNLSSREDQMTPSTSTTTTTSNTGFGHGLSSPFGNKTAPSSSASGVPPSLLHDVLNSFSSPSGFEGTPFEDPFGGIMNSKKDQNLHDTFSKTTTATHLAGAADEGGGGGGGNEGLTRDFLGLRPLSHSDILSMAGIRNCMNDQQNQSQKPWQG. 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11761 536 Gene3D Classic Zinc Finger 73 139 - -
Seca4g11761 536 MobiDBLite consensus disorder prediction 287 319 - -
Seca4g11761 536 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Seca4g11761 536 MobiDBLite consensus disorder prediction 274 333 - -
Seca4g11761 536 FunFam protein indeterminate-domain 5, chloroplastic-like 146 225 - -
Seca4g11761 536 MobiDBLite consensus disorder prediction 364 429 - -
Seca4g11761 536 Pfam Zinc-finger double-stranded RNA-binding 92 114 IPR022755 -
Seca4g11761 536 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 32 525 IPR031140 -
Seca4g11761 536 SMART c2h2final6 92 114 IPR013087 -
Seca4g11761 536 SMART c2h2final6 133 163 IPR013087 -
Seca4g11761 536 SMART c2h2final6 168 188 IPR013087 -
Seca4g11761 536 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Seca4g11761 536 Gene3D Classic Zinc Finger 146 224 - -
Seca4g11761 536 MobiDBLite consensus disorder prediction 1 77 - -
Seca4g11761 536 FunFam protein indeterminate-domain 12-like 71 139 - -
Seca4g11761 536 MobiDBLite consensus disorder prediction 1 55 - -
Seca4g11761 536 SUPERFAMILY beta-beta-alpha zinc fingers 91 188 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11761 Seca-Chr4 257961668 257964244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11761 22 536 IDZ Gene Family AT3G13810 47.140 2.55e-136 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g11761 zf-C2H2_jaz 7.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11761 K25870 - gmx:100785687 715.687