Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11752 ATGGGACATCACTCTTGCTGCAACAAGCAGAAGGTCAAAAGAGGACTATGGTCACCTGAAGAAGATGAAAAACTCATCAACTACATCACAACTTATGGACATGGTTGCTGGAGCTCTGTCCCAAAACTTGCTGGCCTGCAGAGGTGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTAAGACCTGATTTGAAACGTGGAAGTTTCTCTCCTCAAGAAGCAGCCCTTATTATTGATCTCCACAGCATTCTTGGCAATAGCAGGTGGGCTCAGATAGCCAAGCACCTACCTGGAAGAACCGATAATGAGGTGAAAAACTTTTGGAATTCAAGCATAAAGAAGAAACTCCTTTCTCATGATGTTCTTCCTTCTTTAGCCACATTTTCTGATATTCACAGCAGCCACTACAATTTTGGTTCTATGGAAAGTTTCTTCCCTTTAACTGCAAACCCTAACAATGTGATCCTAAATTTTCATCATCATGCAGATCAGCTATACCTTCCCACCCTATCCCCCTCAAGCCTACAAGCTTTTGATCATCAAAATGATATTAAGGTAGACATTCATAACCATTACAATAATGCCAATTCCCTTCCTGTTCAGAATCCAATACCAGAAACAGTGCTACCATCCAATCCATCCTCTTATGAAGATCAGACATGGTCATTGGTATGTGGAGCTCCTCATCTCAATCTCAATCCAAATCAAGAAAATCAAATTACCAAAACTGACACTGGCCCACATTACAACATTGTTGATAAACTCATCAACCAAACTGAATTGCAGCAATATGAAGGTCACTTGGTTGAATCCATTGTGCCAATAAAAGTCAGTGATCAGAGCATTGAGAATTATGCTTGTAGCATCCCAAATTCATCAGAACATGAGGCTCCAGCAAAAACTCAATACTATCCATCTAGTATTTATCCACAAGATCAAATTGTGCCAGCTGCCAATCAATTGGATTACATTGATGCCCTCATCATGTCATCATTGCCATCCTCAACAATCTCATCATCAGTAATATCAAGCAGCTGCCAAATGGTCACAAACCCTATTATTCCTTTAGGATGGGAGCCATGA 1086 0.4024 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIDLHSILGNSRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDVLPSLATFSDIHSSHYNFGSMESFFPLTANPNNVILNFHHHADQLYLPTLSPSSLQAFDHQNDIKVDIHNHYNNANSLPVQNPIPETVLPSNPSSYEDQTWSLVCGAPHLNLNPNQENQITKTDTGPHYNIVDKLINQTELQQYEGHLVESIVPIKVSDQSIENYACSIPNSSEHEAPAKTQYYPSSIYPQDQIVPAANQLDYIDALIMSSLPSSTISSSVISSSCQMVTNPIIPLGWEP. 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11752 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca4g11752 361 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Seca4g11752 361 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca4g11752 361 CDD SANT 69 110 IPR001005 -
Seca4g11752 361 PANTHER MYB DOMAIN PROTEIN 55 1 243 - -
Seca4g11752 361 Gene3D - 11 65 - -
Seca4g11752 361 SMART sant 66 115 IPR001005 -
Seca4g11752 361 SMART sant 13 63 IPR001005 -
Seca4g11752 361 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Seca4g11752 361 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca4g11752 361 CDD SANT 17 61 IPR001005 -
Seca4g11752 361 Gene3D - 66 118 - -
Seca4g11752 361 FunFam MYB transcription factor 6 66 - -
Seca4g11752 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 117 IPR017930 -
Seca4g11752 361 FunFam Myb transcription factor 69 117 - -
Seca4g11752 361 ProSiteProfiles Myb-like domain profile. 62 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11752 Seca-Chr4 257886082 257887998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11752 1 119 MYB Transcription Factor Family AT3G13890 94.958 2.77e-79 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g11752 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11752 K09422 - gmx:100785147 473.396