Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11751 ATGCAAATGGTAACGATTAGACCTGTGGACTATGAACCAAAGGAAGGAGAGATCACATTGGGAACAATGAGCTTCAAGAAGGGAAGAAATCTCAATGACTTGTATAAACCTGATGGATTGGATGAAGTTGTTACTGAAGAATCTACATTCTCAAAGAGAAGGAAGATGGGAAATCTGAAGCTGCAAACCACATTCTCATTCAAATATCTACTTTCAGATAATTCTGGCTCAAAGGAGGGTGGTGATGATGACATGTTCAATAAACAAAGCCCCACAATTTTGTTACCAAAACCAGAAATTTGGTTTTCACCAAAGTCAATTGGTGAGCTTGATGTAGCTGCAATAAAGCTGCAGAAAGTTTACAAGAGCTACAGGACTAGGAGAAATTTGGCAGATTGTGCAGTTGTTTGTGAGGAACTATGGTGGAAGGCTTTAGACTTTGCTGCTCTTAGTCGATGCTCTATATCACATTTTGACTCAGTTAAATCAGAAACAGCCGTTTCAAAATGGGCAAGAGCTAGGACCATGGCTGCTAAGGTGGGAAAAGGTTTGTGTAAAGATGATAAAGCACAGAAATTAGCTCTAAGGCACTGGCTTGAAGCTATTGATCCCCGTCATCGTTATGGGCACAACTTGCACTTATACTATGTTGTATGGTTTAATAGCCAGAGTTCACAACCTTTTTTCTACTGGTTGGATGTTGGAGATGGCAAAGAAGTAAATCTTGAGGTGTGCCCAAGAAGTGAATTACAAAGGCAGTGCATAAAGTACCTTGGACCTAAAGAAAGGGAAGCATATGAAGTGATTGTAGAGGGAGGAAGGCTTGTTTATAGAAAAAGCAAGGACCTTGTACACACTTATGAGGGATCTAAGTGGATTTTTGTTCTTAGCTCATCTAGAGTTTTGTACGTTGGGGAGAAAAAGAAAGGCCAATTTCAACACTCAAGTTTTCTAGCTGGGGGTGCTACTATTGCATCTGGAAGATTGGTTGCCCAAAATGGAGTTCTTCATGCTATATGGCCCTATAGTGGTCATTACTGTCCTACAAAGAAGAATTTTATGGAATTCATTGGCTTCTTGATGGAACATAATGTGGACTTGACAAATGTAAAGAAGTATGCACTTGATGATGATGTGCCACCTTCAAAACCGGTAGATGAGGAGCTGCAGTTTGAGTCCACAGAGGCTAAGTCTTCCAGTGACTCTGCCACTGCCAAAAATTGCAGTCAAGATAATGTGTGTCACATTGAACATAAAGAGAGCAAGCCATTGTCAAGTAAATGGACTACTGGAGCTGGTCCTAGGATTGGTTGTGTGAGAGAGTACCCAGCAAAACTCCAAGTTAAGGCACTTGAACAGCTCAATCTATCACCTAGAGTCAACCATGAAAAATTTGCTGCCAGGGCACCCATTCCCTCCCCAAGGCCTAGTCCAAAAATCCACCTGTCCCCTAGGCTTGTGCACATGGGAATTCCTAGCCCAAGAGAGAAGGGTGGTGACAAGAGCAAGAGAAAGTGGAAGTTATGGAGGAGCTCTTCAGAAGGTTGTGGATTTGGATCCTCCATGAAGAAAGGGAACGGTGGTGCTGCTTCTGACAAGTATTGTCCCTCGTTTGTGGTGGATGAAGAAGCATTTGCTGCTGCAGTGGCCACTGTGGTACGAACTCCGCTCAAAGACTTCATGGTCATCAAGCACGAATGGGCTGCAACCCGCATCCAGGCTGTGTTTCGAGGCTTCTTGGCAAGGCGAGCTTTGAGGGCCCTGAGGGCAGTGGTGAGGCTGCAAGCTATATTTCGTGGTCGGCAAGTGAGAAAGCAAGCAGCTGTTACTCTAAGGTGCATGCAGGCTCTTGTGCGAGTTCAAGCACGTGTCAAGGCAAGGAATGTGAGGAAGTCTCCAGAAGGAAAAGCTGTACAGAAACTATTAAATGAGCATCGCAACCAAGTTGATCCTGTTAAGCAGGCTGAGCAAGGGTGGTGTGACATTCCAGGAACTGTGGAAGAAGTTAAAACAAAACTAAAAATGAGGCAAGAAGGAGCAATTAAGAGGGATAGAACAATGACATACTCTCACTCTACTCAGGAATCAAGAGTGAGTGCCAGTCCAAATTCTAAAGCTGCTAAGCCAGTGACTCCTCTCAAGCACCGCAGCCGAGATAGTAAGAGCTCTGGAGGTAGCTTGTTAGAACGCTGGATAGCATCTAAGCCATGGGAGAGCAGGTTGATGGAAGAGATCTATTTTGACTCACCAGACATGACTCCATTGTCCAGGAAAAATGATGATCCTGTTCTCCCCTTAAATTCATATCAACAAAATGGTTTAGTCAAAGCAAGAAGGAATGGTGTGACAACCAGGATTTCATCTAAATCACTTACAACCAGTCAATCAACTCCATCATCTTCAGCCAAAAGCTCTGACTGCATGTATGATGATAGCCCTGCATCCACTTCATCCACATCTGAACCATCTACCAACAACACTGCTAAGGTGGAAGCAACAGAGGAAACAAATATTTGTAAACCAAGCTACATGAATATGACAGCATCAACTAAAGCTAAACTGAAAGCTTGTAGATTTTCTCAGAATTCAAAGAGACTCTTTATGGATGATTGTCTGTCTCATAGCAATAGAACAGACTTTCTAAGTGGAGATACTAGAAGCTGTTCTGGTTCCTATCCTTCAACTAATATATGGAAGGATCTCTATGCAACACCACTAAGGGCAAGCTATCAAAAATGA 2739 0.4308 MQMVTIRPVDYEPKEGEITLGTMSFKKGRNLNDLYKPDGLDEVVTEESTFSKRRKMGNLKLQTTFSFKYLLSDNSGSKEGGDDDMFNKQSPTILLPKPEIWFSPKSIGELDVAAIKLQKVYKSYRTRRNLADCAVVCEELWWKALDFAALSRCSISHFDSVKSETAVSKWARARTMAAKVGKGLCKDDKAQKLALRHWLEAIDPRHRYGHNLHLYYVVWFNSQSSQPFFYWLDVGDGKEVNLEVCPRSELQRQCIKYLGPKEREAYEVIVEGGRLVYRKSKDLVHTYEGSKWIFVLSSSRVLYVGEKKKGQFQHSSFLAGGATIASGRLVAQNGVLHAIWPYSGHYCPTKKNFMEFIGFLMEHNVDLTNVKKYALDDDVPPSKPVDEELQFESTEAKSSSDSATAKNCSQDNVCHIEHKESKPLSSKWTTGAGPRIGCVREYPAKLQVKALEQLNLSPRVNHEKFAARAPIPSPRPSPKIHLSPRLVHMGIPSPREKGGDKSKRKWKLWRSSSEGCGFGSSMKKGNGGAASDKYCPSFVVDEEAFAAAVATVVRTPLKDFMVIKHEWAATRIQAVFRGFLARRALRALRAVVRLQAIFRGRQVRKQAAVTLRCMQALVRVQARVKARNVRKSPEGKAVQKLLNEHRNQVDPVKQAEQGWCDIPGTVEEVKTKLKMRQEGAIKRDRTMTYSHSTQESRVSASPNSKAAKPVTPLKHRSRDSKSSGGSLLERWIASKPWESRLMEEIYFDSPDMTPLSRKNDDPVLPLNSYQQNGLVKARRNGVTTRISSKSLTTSQSTPSSSAKSSDCMYDDSPASTSSTSEPSTNNTAKVEATEETNICKPSYMNMTASTKAKLKACRFSQNSKRLFMDDCLSHSNRTDFLSGDTRSCSGSYPSTNIWKDLYATPLRASYQK. 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11751 912 MobiDBLite consensus disorder prediction 763 832 - -
Seca4g11751 912 Pfam IQ calmodulin-binding motif 113 129 IPR000048 GO:0005515
Seca4g11751 912 Pfam IQ calmodulin-binding motif 589 606 IPR000048 GO:0005515
Seca4g11751 912 Pfam IQ calmodulin-binding motif 567 586 IPR000048 GO:0005515
Seca4g11751 912 MobiDBLite consensus disorder prediction 691 706 - -
Seca4g11751 912 PANTHER IQ DOMAIN-CONTAINING PROTEIN IQM3 52 480 IPR044159 -
Seca4g11751 912 MobiDBLite consensus disorder prediction 750 832 - -
Seca4g11751 912 MobiDBLite consensus disorder prediction 686 726 - -
Seca4g11751 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 553 607 IPR027417 -
Seca4g11751 912 SMART iq_5 587 608 IPR000048 GO:0005515
Seca4g11751 912 SMART iq_5 109 131 IPR000048 GO:0005515
Seca4g11751 912 SMART iq_5 564 586 IPR000048 GO:0005515
Seca4g11751 912 ProSiteProfiles IQ motif profile. 565 593 IPR000048 GO:0005515
Seca4g11751 912 Gene3D - 563 616 - -
Seca4g11751 912 ProSiteProfiles IQ motif profile. 589 616 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11751 Seca-Chr4 257850317 257866737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11751 503 902 IQD Protein Family AT1G72670 44.581 1.27e-82 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11751 - - gmx:100805874 805.438