Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11746 ATGCTCTCTGCAAGGAAAATATTAAAACCTACATTGATTATAATCTTGATCCAGGACTCACATATATCCGTTGTTGTTTTCTCAAAAAATTATGCTTCCTCAAAGTGGTGTTTAGATGAACTTCTCCAATGCAGAAAACATCATGGGCAGGTAGTTATACCTGTCTTCTATCAAATAGATCCAACACATGTACGCAACCGGACAGAGAGTTATGAGAAAGCATTCGCCAAATATGAGAGAGAACTCAGTGGAAAGCTGCCCTCACCGAGGCCGCCAATATATCTGGATGGGACTCTAGTACCTTTAGAAGCTAAGCTGTCCCTGACGTGTCCTAATGAACTGAGAGGCCTTGTTGAGATTGATGAAAACAGTAGACAAATTGAATCATTACTGAATGGATCTCCAAGAATTGGAATTTGGGGTATGGGTGGAATAGGAAAGACAACCATAGCCAGAAAGATGTTTACCAAGCACTTTGCACAATATGACAGTGTATGCTTCTTAGAAAGAGTAAGAGAAGAATCAAAAAAATTTGGACTAACATGTGTGCGGAATAAGCTTCTCAGTGAGCTATTAAAGCGAGAAATTACCTCATCTAATATTATTGGTCACACATTCATTCAGAGGAGGCTTAGTGGTAAAAAAGTTTTCATTGTACTTGATGATGTGGACAATGCTGCACAATTAGAATATCTGTGTGGAGAACTTGGTCACCTATAA 720 0.3889 MLSARKILKPTLIIILIQDSHISVVVFSKNYASSKWCLDELLQCRKHHGQVVIPVFYQIDPTHVRNRTESYEKAFAKYERELSGKLPSPRPPIYLDGTLVPLEAKLSLTCPNELRGLVEIDENSRQIESLLNGSPRIGIWGMGGIGKTTIARKMFTKHFAQYDSVCFLERVREESKKFGLTCVRNKLLSELLKREITSSNIIGHTFIQRRLSGKKVFIVLDDVDNAAQLEYLCGELGHL. 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11746 239 Gene3D - 103 238 IPR027417 -
Seca4g11746 239 Gene3D - 8 88 IPR035897 -
Seca4g11746 239 PRINTS Disease resistance protein signature 210 224 - -
Seca4g11746 239 PRINTS Disease resistance protein signature 136 151 - -
Seca4g11746 239 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 78 IPR035897 -
Seca4g11746 239 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 234 IPR044974 GO:0006952
Seca4g11746 239 Pfam NB-ARC domain 128 231 IPR002182 GO:0043531
Seca4g11746 239 ProSiteProfiles TIR domain profile. 1 86 IPR000157 GO:0007165
Seca4g11746 239 Pfam TIR domain 16 82 IPR000157 GO:0007165
Seca4g11746 239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 236 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11746 Seca-Chr4 257811927 257813049 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11746 24 239 WRKY Transcription Factor Family AT4G12020 26.724 2.73e-17 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11746 - - cam:101489032 257.299