Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11743 ATGTCTCCCTCTTCCAAGAAGTACGATGTATTCATTAGCTTTAGAGGTGAAGATACGCGCACTAACTTCACAAGCCATGTTCATCATGCTCTATGCAAGGAAAATATCGAAACATACATTGATTATAATCTTAAAAAGGGAGATGAGGTTGGGCGTGAACTTGCTGAAGCAATCCAAGACTCACATATATCTCTCATCATTTTCTCAGAAAACTATGCTTCCTCAAAGTGGTGCCTGGATGAACTCCTCAAAATACTTCAATGCAGAAAACATCATGGACAGGTAGTTATACCTGTCTTCTATCAAATAGATCCAACACATGTACGCAAACAGACAGGGAGTTATGAGAAAGCATTCGCCAAATATGAGAGAGAACTTAGGAACAATGAATCCTATGAAGACAAAGTGTCTGAGTGGAAAGCTGCTCTCACTGAAGCTGCCAATATATCTGGATGGGACTCTAGTACCCATAGGGATGATTCTCAAGTCATCGAGAACATTGTGAAAGATGTTTGGCAGAAGCTGTCCCTGATGTATCCTAATGAACTGAAAGGCCTGGTTGAAATTGATGAAAACAGAAAATACATTGAATTATTACTGAAAAGATCTCCAAGAATTGGAATTTGGGGTATGGGTGGAATAGGAAAGACGACCATAGCCAGAGATATGTTTGCCAAACACTTTGCACAATATGACAGTGTATGCTTCTTGGAAAAAGTAAGAGAAGAATCAGAGAAGCTTCTCAGTGAGCTACTAAAGCAACAAATTACCACATCTAATGTTCTTGGAGGCACATTCATTAAGAGGAGGCTCAGTGGTAAAAAGGTTTTCATTGTACTTGATGATGTAGACAATGCTGCACAATTAGAATACTTGTGTGGAGAGCTTGGTGACCTTGGACCACATAGTAGACTCATTATAACAACAAGAGATAGGCACACGCTTAGTACAAGAGTTGATGAGATTTATGAGGTCACCAAATGGAAGTTTTCAGAATCTCTAAAGCTTTTTAGCTTAGGAGCCTTCAACCAAAGCCATCCTAAAGAGGGTTATGAGCGTCTCTCAGAAAGAGCAGTAGCACATGCTGGAGGCATTCCATTAGCTTTAAAAGTTTTGGGTTTACATTTTAGATCCAGAAATATTAAATTCTGGGAATCTGAATTGAGTTATTTGGAGAACAAGGAGGAATCCTATGATGAAATTCGAGAAGTATTACAAGTGAGCTATAAAGGATTAACAAGGCGAGAGAAGGAAATATTTCTGGACATTGCATTCTTTTTCAAAGACGAAAATAAAGATTTCGTCATAAGGATACTTGATGCTTGTGGTTTCAATGCCACTAGTGGAATAGAAATCCTTCAAGATAAAGCTCTTGTAACTATTTCCAACAGAAATAGAATACAGATGCATGACTTACTGCAAAAAATGGCCTTCGATATAGTAAGGGAAGAATCTAGTAGAGACCCGAGAAAACGTAGTCGATTGAGGGACACTGAAGAAGTTCGTGATGTACTTAAAAACAACAAGGGGATTAATTCAGTTGAAGGTATAACATTAGATTTGTCTCAAAGAGTAGATCTGCACTTGCGAGCTTACACATTTAACATGATGACTGATTTAAGATTTCTTAGATTACATGTCCCATTGGGAAAGAAGAGATCAAGTACTGTGTACCATCCTACAGTTCTAATGCCATTTTCTGATAAATTGAGGTACCTTGAGTGGAATGGATACCCTTTTAAGTCTCTTCCACCATCTTTTTATGCTAAGCTGCTTGTTGAGATTTGCTTGCCACATAGCAATGTTGAATATCTTTGGCACGGGAAGCAGGAACTTGTGAACTTAGAAGGAATCGACCTAAGTGAATGCAAACAGTTTATGAAGCTCCCTGATTTGTCTGGGGCGTCAAAACTTAAATGGTTGTATCTCTCCGGTTGTGAAAGTTTATGTGATGTTCAGCCATCTGTTTTTTCTAAGGACACACTTGTTACTCTGCTACTGGATAGGTGCAAAAAATTGGAAAGTCTTACAAGTGAGAAGCATTTAAGATCCCTGGAGAAGATCAATGTCTATGGCTGCTCAAGTCTCAAGGAATTTTCATTGTCCTCTGATTCAATTGAAAACTTGGATTTAAGCAATACAGGAATCGAAATATTGCACTCATCAATCGGTCATTTAGGTAAGCTTGAGTGGCTCAATCTTGAAGGTTTAAGATTACAGAATCTACCAAATGAATTGTCTCAGCTGAGTTCACTTACTGAGCTTTGGATTTCAAATTGCAGTATAGTAACTGAACCAAAGTTACAAGCCCTATTTAGTGGCCTCAGGTCTTTAAAAATACTTTATTTGAAAGATTGTTGTAACTTGTCTGAACTCCCTGACAATATCAGTTCCTTATCATCATTATATGAATTAAGACTAGATGGAAGCAGTGTGGAGATGTTGCCTACAAGCATTTGGTTTCTCCTTAAGCTAGAAATCTTGTCCTTAGACAATTGCAGGAAGCTTTGTTGTTTGCGGGAACTTCCTTTATACATCAAAGAGTTTCATGCAGATAACTGCACCTCATTGGTGACAGTATCCACTTTGAAGAGCTTTTCAAAAGTGATGAATGGAAAGGAGAAATGCCTTTCATTCAAGAATGACATGGAATTGGAAGGGCCCTCACTCAACCGCATCATGGAAGATGGCATATTAACAATGAAGAGTGCTGCATTTCACAATATATTAGTAAGAAAGCACAGTTTGCGAACCCATAGTTACAATTATAACAGTGTCGAGGTTTGTCTACCAGGAAGCAGAGTTCCGAAGCAGCAATTCAGATACAGAACAACAAATTCCTCCATAACTATTGGACTTCCTCACCTTTCTTACTCGTTGGGGTTTATTTTCTCGGTCGTTGTTTCTCCATCCCTTGGAATGAAGAAGAAGGAGCATGATCTTCTTGGTGCTAAAATCCAATGTCAATGCTACTCAGAGGATGGCAAAAAGGTGGGACATGTGTCTACGTGGCATCATAAAACTGTTACAGATTTGAACTCGGACCATGTTTATGTATGGTATGATCCATACCACTCTGATAGCATTCTCGACAATGGTGAAACAAAGGTTTCTTTTGAATTCAGCGTTATCACTGGACGTGATGGTTTGTTCAGCATGAAAGAGTGCGGGGTCCTCCCAATTTATTTCTCGGAATTTCGGAGCCTTGTAGGCACAATGAAGTTGGACAGTAGCTTAGTATGGGAGTTGACATATCAGTTGTCAGTGGAGTTGGGATCTGATTTGTATGAGGCAATGGAATTTGAGAAGGAAGGCAATGATGACATCGAATCAGTTGAAAGATGTGATGAGCACGAAGGCAATGACATCGAATCAAGTGAAAGGTGTGGTCTGAAGGAATGCAATGGCATTAATACCCAGCTACAGAACCAAGAATTGGACTTGAATGATAAAGGTTTCTGTTCCTGTGCTTGCTTAGTAGGTCCATTGATGTACTTATGGAGATTAAACAGCAGTTAG 3519 0.3905 MSPSSKKYDVFISFRGEDTRTNFTSHVHHALCKENIETYIDYNLKKGDEVGRELAEAIQDSHISLIIFSENYASSKWCLDELLKILQCRKHHGQVVIPVFYQIDPTHVRKQTGSYEKAFAKYERELRNNESYEDKVSEWKAALTEAANISGWDSSTHRDDSQVIENIVKDVWQKLSLMYPNELKGLVEIDENRKYIELLLKRSPRIGIWGMGGIGKTTIARDMFAKHFAQYDSVCFLEKVREESEKLLSELLKQQITTSNVLGGTFIKRRLSGKKVFIVLDDVDNAAQLEYLCGELGDLGPHSRLIITTRDRHTLSTRVDEIYEVTKWKFSESLKLFSLGAFNQSHPKEGYERLSERAVAHAGGIPLALKVLGLHFRSRNIKFWESELSYLENKEESYDEIREVLQVSYKGLTRREKEIFLDIAFFFKDENKDFVIRILDACGFNATSGIEILQDKALVTISNRNRIQMHDLLQKMAFDIVREESSRDPRKRSRLRDTEEVRDVLKNNKGINSVEGITLDLSQRVDLHLRAYTFNMMTDLRFLRLHVPLGKKRSSTVYHPTVLMPFSDKLRYLEWNGYPFKSLPPSFYAKLLVEICLPHSNVEYLWHGKQELVNLEGIDLSECKQFMKLPDLSGASKLKWLYLSGCESLCDVQPSVFSKDTLVTLLLDRCKKLESLTSEKHLRSLEKINVYGCSSLKEFSLSSDSIENLDLSNTGIEILHSSIGHLGKLEWLNLEGLRLQNLPNELSQLSSLTELWISNCSIVTEPKLQALFSGLRSLKILYLKDCCNLSELPDNISSLSSLYELRLDGSSVEMLPTSIWFLLKLEILSLDNCRKLCCLRELPLYIKEFHADNCTSLVTVSTLKSFSKVMNGKEKCLSFKNDMELEGPSLNRIMEDGILTMKSAAFHNILVRKHSLRTHSYNYNSVEVCLPGSRVPKQQFRYRTTNSSITIGLPHLSYSLGFIFSVVVSPSLGMKKKEHDLLGAKIQCQCYSEDGKKVGHVSTWHHKTVTDLNSDHVYVWYDPYHSDSILDNGETKVSFEFSVITGRDGLFSMKECGVLPIYFSEFRSLVGTMKLDSSLVWELTYQLSVELGSDLYEAMEFEKEGNDDIESVERCDEHEGNDIESSERCGLKECNGINTQLQNQELDLNDKGFCSCACLVGPLMYLWRLNSS. 1173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11743 1172 Gene3D - 329 413 IPR042197 -
Seca4g11743 1172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 423 IPR027417 -
Seca4g11743 1172 Gene3D Ribonuclease Inhibitor 705 879 IPR032675 -
Seca4g11743 1172 Gene3D Ribonuclease Inhibitor 483 704 IPR032675 -
Seca4g11743 1172 Gene3D - 4 172 IPR035897 -
Seca4g11743 1172 SMART till_3 7 149 IPR000157 GO:0007165
Seca4g11743 1172 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 177 - -
Seca4g11743 1172 PRINTS Disease resistance protein signature 270 284 - -
Seca4g11743 1172 PRINTS Disease resistance protein signature 205 220 - -
Seca4g11743 1172 PRINTS Disease resistance protein signature 362 376 - -
Seca4g11743 1172 PRINTS Disease resistance protein signature 610 626 - -
Seca4g11743 1172 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 702 IPR044974 GO:0006952
Seca4g11743 1172 Pfam NB-ARC domain 197 410 IPR002182 GO:0043531
Seca4g11743 1172 Pfam C-JID domain 930 1065 IPR045344 -
Seca4g11743 1172 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 152 IPR035897 -
Seca4g11743 1172 Coils Coil 115 142 - -
Seca4g11743 1172 ProSiteProfiles TIR domain profile. 6 175 IPR000157 GO:0007165
Seca4g11743 1172 Pfam TIR domain 7 185 IPR000157 GO:0007165
Seca4g11743 1172 SUPERFAMILY L domain-like 468 859 - -
Seca4g11743 1172 Gene3D - 173 322 IPR027417 -
Seca4g11743 1172 Coils Coil 237 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11743 Seca-Chr4 257788393 257795175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11743 4 829 WRKY Transcription Factor Family AT4G12020 32.794 6.21e-100 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11743 - - cam:101489032 1441.4