Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11742 ATGACAGGAGGGAGGATAAGGGCAAGGCTCCGCAAGAGCCATCTTTACACATTTGGTTGCCATCGGCCAACTCCCACAGACGAGGGGCCTCATGCACTTCAAGGTCCTGGGTACTCGCGAATTGTTTATTGCAACCAGCCTCTGCTTCATGAAAAGAGACCTCTATATTACTGCAAGAATGATATATCCACGACCAAATACAATATTATTACATTTTTTCCCAAGGCAATTTTTGAACAGTTTCGTAGGGTTGCTAACATATACTTCCTTTTGGCTGCATGCCTCTCAGCCTCTCCAATTTCACCTTTCAGCCCACTGAGCATGATTGCTCCTTTGGCATTTGTTGTGGGGCTTAGTATGGCAAAGGAAGCATTGGAAGATTCACGCAGGTTCCTTCAGGATGTCAAAGTTAACCACCGGAAAGTTAAACACCATAAAGGCAATGGTGATTTTGGCCCCAGGTCGTGGCAGAACATTATGGTTGGGGATGTGGTAAAAATAGAAAAGGATCAGTTTTTCCCAGCTGATTTGCTTCTATTGTCATCAAGTTATGAGGATGGGATATGCTACGTGGAGACAATGAATTTAGATGGTGAAACCAACTTGAAGGTGAAAAGATCTTTGGAGTCTACCTTGACTCTAGATAATGATGAGGTTTTTAAGGATTTCACTGGAACAATACGATGTGAAGACCCAAATCCCAATCTTTACACTTTTGTTGGAAACCTTGAGTATGAGCGCCAGATTTATCCTATTGATCCTAGTCAAATTCTCCTTCGAGATTCTAAGCTCAGAAACACTGATCACATCTATGGGGTGGTCATTTTCACCGGTCATGACAGCAAGGTCATGCAAAATGCCACAAGATCCCCTTCAAAACGGAGCACAATAGAAAAGAAGATGGATTATATCATATACACTCTCTTCACTGTCCTTATTTTGATATCCTTCATTAGTTCCATAGGATTTATGATCAAGACTAAGTATCAAACCACAAAGTGGTGGTACATACGACCTGATAATATTGAATACCAGTATGATCCCCAGAAAGTTGGAGTGGCTGGGATGAGTCATCTGATTACTGCACTAATTCTTTATGGATATTTGATACCCATCTCACTTTATGTTTCCATTGAGGTTGTAAAGGTTTTACAGGCAACCTTCATTAACCAAGACATTCAAATGTATGATGAAGAAACTGGGACTCCAGCTGAAGCACGGACATCAAATTTGAATGAAGAGTTGGGTCAGGTAGACACTATCCTCTCTGATAAAACTGGCACTTTAACCTGCAATCAGATGGACTTTTTGAAGTGCTCCATTGCTGGTACTGCATATGGTGTGCGTTCCAGTGAAGTTGAACTCGCTGCAGCAAAGCAGATGGCTTCTGATCTTGAAGACCAGGAATCAGATCTTTCCAATTTTCCCATGACTAAGGCTAGAGTTGAAGAAGTTGAACTGGAGACAGTTGTTACTTCCAATGTTTATGAGGATAAAAAACAAGCCATAAAGGGATTTGGTTTTGAAGACGAACGTCTCATGAAGTGTAATTGGTTGAAAGAGCCCAATGCCGATGCCATTTTAATGTTTTTCCGAATATTAGCAGTTTGCCATACTGCCATTCCTGAGATGAATGAGGAGACAGGCACCTTTACATATGAAGCTGAGTCACCTGATGAAGGTGCTTTTCTTGTAGCAGCAAGAGAGTTTGGCTTTGAGTTTTGTAGAAGGAATCAGTCAAGTATTTTCATACGTGAAAGAGTTTCTGCTTCAGGGGAAGTGGTTGAAAGGGAGTACAAACTCTTAAATCTTCTGGATTTCACAAGTAAAAGAAAGCGTATGTCAGTGATTGTGCGTGATGAGGAGGGCAAAATTTTTCTTCTGTGCAAAGGGGCTGACAGTATCATATTTGATCGTTTGTCAAAAAATGGAAAAATGTATTTGGAGGCAACTACCAGACATTTAAATGATTATGGGGAAGCTGGTTTGCGAACACTAGCTCTGTCTTATAGAAGGCTTGATGAGCAAGAGTACACTGCTTGGAACAATGAGTTTCAGAAAGCCAAAGCAGCTGTTGGGGCTGACAGGGACGCAATGCTTGAGCAGGTATCAGAGGTTATGGAAAAAGAATTGATTCTTGTTGGGGCTACTGCTGTAGAAGACAAACTGCAGAAAGGGGTTCCCCAATGTATTGATAAACTTGCCCAAGCCGGTCTCAAGATCTGGGTACTGACAGGGGATAAGATGGAGACTGCAATCAACATTGGATTTGCCTGCAGTTTGCTTCGACAGGGCATGAAGCAGATATGTATATCCATGAATTCAGACTCAGCGTCCAATGATGTCAAAGAGGCCATCAAGGACAACATTTTAAATCAAATCACCAATGCTTCACAAATGATAAAGCTGGAGAAGGATCCTCATGCTGCCTTTGCATTAATTATTGATGGGAAAACTCTGACATATGCTTTAGAAGATGATATGAAGCACCAATTTTTGGGATTGGCAGTTGATTGTGCATCTGTCATCTGCTGTCGTGTGTCTCCCAAGCAAAAGGCATTGGTAACAAGGCTGGTGAAGGAAGGAACTGCGAAGACCACTCTAGCAATAGGCGATGGTGCAAATGATGTTGGCATGATTCAAGAGGCAGATATTGGTGTTGGAATCAGTGGGGTTGAAGGTATGCAGGCGGTGATGGCTAGTGACTTTTCAATTGCCCAATTTCGATTTTTGGAGCGCCTCTTGGTAGTTCATGGACACTGGTGTTACAAGAGAATTGCGCAAATGATCTGTTATTTCTTCTACAAGAATATAGCATTTGGCCTCACCATCTTCTATTTTGAGGCCTTTACAGGCTTCTCTGGTCAATCGGTTTATGATGACTGGTACATGATATTGTTCAATGTTGTTCTGACATCATTACCTGTAATTTCACTTGGTGTTTTTGAACAAGATGTTCCATCAGAAGTTTGTTTACAGTTTCCTGCACTGTATCAACAAGGACCCAAAAATCTGTTCTTTGACTGGTATAGAATATTGGGATGGATGGGAAATGGTTTATATTCCTCCCTCATCATCTTCTTCCTTACCATCACCATCTTCTACGACCAAGCATTCCGTGTTGATGGCCAGACTGCTGACATGGCTGCTGTTGGGACCACAATGTTCACTTGCATCATCTGGGCGGTCAACTGCCAGATTGCGCTGACAATGAGCCATTTTACATGGATTCAGCACCTGTTTGTATGGGGTAGCATAGTCACTTGGTATATCTTTCTCTTCTTATATGGCATGCTTTCTCCTGAATATTCCAAAAATGCCTACCAAATACTGGTTGAAGCTCTTGGTCCTGCGCCTATTTATTGGACAGCAACACTTTTAGTTACAGTTACATGCAATCTTCCTTATCTTACCCATATATCCTTCCAAAGATGTTTCAACCCCATGGATCACCACATTATCCAAGAAATCAAGTACTACAAGAAGGATATTGAGGATCAACACATGTGGACAAGGGAGCGTTCTAAAGCCAGACAGGAAACCAAGATTGGGTTCACGGCAAGAGTGGAAGCCAAGATCAGGCAATTGAAGGGAAAGTTGCACAAGAAGCAATCTTCCTTGACTATTTTGTCCCCATCCCGATCGTGA 3648 0.4197 MTGGRIRARLRKSHLYTFGCHRPTPTDEGPHALQGPGYSRIVYCNQPLLHEKRPLYYCKNDISTTKYNIITFFPKAIFEQFRRVANIYFLLAACLSASPISPFSPLSMIAPLAFVVGLSMAKEALEDSRRFLQDVKVNHRKVKHHKGNGDFGPRSWQNIMVGDVVKIEKDQFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRSLESTLTLDNDEVFKDFTGTIRCEDPNPNLYTFVGNLEYERQIYPIDPSQILLRDSKLRNTDHIYGVVIFTGHDSKVMQNATRSPSKRSTIEKKMDYIIYTLFTVLILISFISSIGFMIKTKYQTTKWWYIRPDNIEYQYDPQKVGVAGMSHLITALILYGYLIPISLYVSIEVVKVLQATFINQDIQMYDEETGTPAEARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVRSSEVELAAAKQMASDLEDQESDLSNFPMTKARVEEVELETVVTSNVYEDKKQAIKGFGFEDERLMKCNWLKEPNADAILMFFRILAVCHTAIPEMNEETGTFTYEAESPDEGAFLVAAREFGFEFCRRNQSSIFIRERVSASGEVVEREYKLLNLLDFTSKRKRMSVIVRDEEGKIFLLCKGADSIIFDRLSKNGKMYLEATTRHLNDYGEAGLRTLALSYRRLDEQEYTAWNNEFQKAKAAVGADRDAMLEQVSEVMEKELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKQICISMNSDSASNDVKEAIKDNILNQITNASQMIKLEKDPHAAFALIIDGKTLTYALEDDMKHQFLGLAVDCASVICCRVSPKQKALVTRLVKEGTAKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFTGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYSSLIIFFLTITIFYDQAFRVDGQTADMAAVGTTMFTCIIWAVNCQIALTMSHFTWIQHLFVWGSIVTWYIFLFLYGMLSPEYSKNAYQILVEALGPAPIYWTATLLVTVTCNLPYLTHISFQRCFNPMDHHIIQEIKYYKKDIEDQHMWTRERSKARQETKIGFTARVEAKIRQLKGKLHKKQSSLTILSPSRS. 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11742 1215 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Seca4g11742 1215 Gene3D - 576 692 IPR023299 GO:0000166
Seca4g11742 1215 FunFam Phospholipid-transporting ATPase 581 712 - -
Seca4g11742 1215 SFLD Haloacid Dehalogenase 404 921 - -
Seca4g11742 1215 NCBIfam HAD-IC family P-type ATPase 842 951 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g11742 1215 NCBIfam phospholipid-translocating P-type ATPase 57 1156 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Seca4g11742 1215 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 36 1172 - -
Seca4g11742 1215 FunFam Phospholipid-transporting ATPase 714 910 - -
Seca4g11742 1215 CDD P-type_ATPase_APLT_Dnf-like 60 1030 - -
Seca4g11742 1215 Pfam Cation transport ATPase (P-type) 536 641 - -
Seca4g11742 1215 SUPERFAMILY Calcium ATPase, transmembrane domain M 51 1139 IPR023298 -
Seca4g11742 1215 Gene3D - 710 910 IPR023214 -
Seca4g11742 1215 Pfam Phospholipid-translocating ATPase N-terminal 42 109 IPR032631 -
Seca4g11742 1215 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Seca4g11742 1215 PRINTS P-type cation-transporting ATPase superfamily signature 870 889 - -
Seca4g11742 1215 Coils Coil 448 468 - -
Seca4g11742 1215 Pfam Phospholipid-translocating P-type ATPase C-terminal 898 1148 IPR032630 -
Seca4g11742 1215 SUPERFAMILY Calcium ATPase, transduction domain A 147 287 IPR008250 -
Seca4g11742 1215 SFLD p-type atpase 404 921 IPR044492 -
Seca4g11742 1215 Gene3D - 113 289 - -
Seca4g11742 1215 FunFam Phospholipid-transporting ATPase 118 288 - -
Seca4g11742 1215 SUPERFAMILY HAD-like 410 914 IPR036412 -
Seca4g11742 1215 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 513 676 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11742 Seca-Chr4 257753770 257761349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11742 1 1211 Primary Pumps ATPases AT1G17500 75.783 0.0 1949
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11742 K01530 - gmx:100819559 2196.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11742 4 257753770 257761349 Seca4g08843 4 211051138 211057624 PCT