Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11741 ATGGAACCTCGAGTTGGGAACAAGTTCCGTCTCGGCCGGAAGATTGGTAGCGGATCTTTCGGGGAGATCTATCTCGGTACCAATATTCAGACAAATGAAGAGGTTGCAATTAAGCTTGAAAATGTCAAAACCAAGCACCCTCAATTGTTGTATGAATCCAGGCTGTATAAAATACTGCAAGGAGGAAATGGCATACCGAATGTGAAATGGTTTGGTGTTGAAGGAGAATACAATGTCCTTGTAATGGATTTACTGGGCCCTAGTCTTGAGGATTTATTCAATTTCTGTAGTCGGAAATTGTCGCTCAAAACTGTTCTCATGCTTGCTGATCAAATGGTAGGCTTTCCCCCTATCACTTCGCAGATAAATCGAGTTGAATTTGTTCATTCCAAGTCATTTTTACATAGGGACATCAAGCCAGACAACTTTCTCATGGGTTTAGGGAGGCGTGCAAATCAAGTGTATATCATTGACTTTGGCCTTGCTAAGAAATACAGAGACACCTCTACACATCAGCATATTCCTTACAGAGAGAATAAGAATTTGACAGGAACTGCTAGGTATGCCAGTATGAATACTCATCTTGGAATTGAGCAAAGCCGTAGGGATGATTTAGAGTCACTTGGATATGTTCTTATCTGCAGTCTGCCTTGGCAGGGATTGAAAGCAGGTACTAAGAAGCAGAAGTATGAGAAAATCAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCTCTCTGCCGTGGCTATCCTTCAGAATTTGCATCATACTTCCATTATTGTCGGTCACTGAGGTTTGATGATAAACCAGATTATGCTTATTTGAAAAGACTTTTGCGTGACCTTTTCATTCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAATTGTCACTCCTCCTGCCCGTGCCATTGGTCCTGCTGCTGGACCGAGTTCTGGTATGCCGCCAGCTTCTGCAAACGCTGATGGACAGTCAGTAGGAGGAGAAGGTGGTAGGCGTACTGGTTGGTCTTCATCAGATCCTACTCGTAGGAGAAACTCTGGACCTATTGCTAATGATGGAATATTATCTAGGCAAAAAGGCCCACTTATGAATGACTCAACTGGATCTAAAGATGTTATGTTGCCAAGTTCTACTTTCTTCCGACCTGGTGGATCTGCAAGGCGAGGTGCTGTTTCAAGCAGCCGTGATGCAGTTGTTGGCAGTGAGACTGAGACCTCTCGTGAGTCTCGTCCTCTCACCGTGGATCCAAATAAGGGAGCACTCCGTAAAATCTCTGGTGCTCAGAGAAGTTCACCTACCATGTCATCTGAGCACAACCGAGCATCCTCTGGCAGAAACACATCAAATACAAAGAACTTGGAGTCAACTCTTAGAGGTATTGAGAGCCTGCATTTCAATGACGAGAGGGTACAGTATTAG 1449 0.4341 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESRLYKILQGGNGIPNVKWFGVEGEYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMVGFPPITSQINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLICSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLLRDLFIREGFQFDYVFDWTILKYQQSQIVTPPARAIGPAAGPSSGMPPASANADGQSVGGEGGRRTGWSSSDPTRRRNSGPIANDGILSRQKGPLMNDSTGSKDVMLPSSTFFRPGGSARRGAVSSSRDAVVGSETETSRESRPLTVDPNKGALRKISGAQRSSPTMSSEHNRASSGRNTSNTKNLESTLRGIESLHFNDERVQY. 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11741 482 SMART serkin_6 9 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11741 482 FunFam Casein kinase I isoform delta-like 1 313 - -
Seca4g11741 482 SUPERFAMILY Protein kinase-like (PK-like) 5 295 IPR011009 -
Seca4g11741 482 CDD STKc_CK1_delta_epsilon 8 287 - -
Seca4g11741 482 FunFam Putative Casein kinase I 1 85 - -
Seca4g11741 482 Pfam Protein kinase domain 10 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11741 482 MobiDBLite consensus disorder prediction 370 384 - -
Seca4g11741 482 MobiDBLite consensus disorder prediction 406 422 - -
Seca4g11741 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Seca4g11741 482 MobiDBLite consensus disorder prediction 340 355 - -
Seca4g11741 482 MobiDBLite consensus disorder prediction 311 470 - -
Seca4g11741 482 MobiDBLite consensus disorder prediction 434 469 - -
Seca4g11741 482 ProSiteProfiles Protein kinase domain profile. 9 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11741 482 Gene3D Transferase(Phosphotransferase) domain 1 1 312 - -
Seca4g11741 482 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Seca4g11741 482 PANTHER CASEIN KINASE-RELATED 9 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11741 Seca-Chr4 257748415 257753506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11741 7 214 EF-hand Containing Proteins AT2G17890 25.688 3.36e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Seca4g11741 Pkinase 3.7e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11741 K02218 - gmx:100819017 768.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11741 4 257748415 257753506 Seca4g08845 4 211062818 211068163 PCT