Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11737 ATGGTTTTTGAAGCTCTATCAACACTAAAAGATGCTAATGGATCCAACCTAAATTCCATTGTTAGTTTCATCGAGCAAAAGCATCAAGTTCCCCAAAATTTCAGAAGGGCACTGAGTACAAGGTTGAGGAGGCTTGTTAGTCAAGGGAAGCTTGAAAAGAAGGATGGCAGACCACAACCGCAGTTGCCAGCCTCCTGTTTTGTGGCATCTAATGAGATAATTAAGGAAGCTGCTGATGCTGCAGCCTACAGAGTTGCTGATGCTGAAAGCAAATCATGTGTGGCAGCTGAGGCAGTCAAGGAGGTGGAAAGGCTCTCATTTATGGCTGATGATGTTGATGCAATGTTGCTGCTAGCAAAAGACCTTTATAAACAACCCTTCCTACTTATTAGTGAATTTTCTAATCCTATGACTCTCAATAATAACCATTGA 432 0.419 MVFEALSTLKDANGSNLNSIVSFIEQKHQVPQNFRRALSTRLRRLVSQGKLEKKDGRPQPQLPASCFVASNEIIKEAADAAAYRVADAESKSCVAAEAVKEVERLSFMADDVDAMLLLAKDLYKQPFLLISEFSNPMTLNNNH. 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11737 143 Gene3D - 1 92 IPR036388 -
Seca4g11737 143 SMART h15plus2 1 57 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca4g11737 143 Pfam linker histone H1 and H5 family 1 55 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca4g11737 143 SUPERFAMILY "Winged helix" DNA-binding domain 1 56 IPR036390 -
Seca4g11737 143 PANTHER SINGLE MYB HISTONE 4 1 55 IPR044597 GO:0003691
Seca4g11737 143 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 1 64 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11737 Seca-Chr4 257721120 257725221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11737 1 124 Single Myb Histone (SMH) Gene Family AT1G72740 40.000 3.32e-26 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11737 K09422 - gmx:780537 145.591