LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g11716	ATGCAAATGCCGCCGTCTATTGTAGGTCCCACCGTCATTGCCATCAATGACGGCCGCAACAGCCAACAAGCCGTCAAATGGGCGGTGGATCACCTCCTGAAGAAGAACTCCTCCTGCACCCTTATTCATGTTCGCACCAAGCCTATCCATCATCATGATGTTGATGTTCCTAGAAACGGTCGTCCACCAACTGAAGATGAATTGCACCAACTCTTCCTTCCCTTTCGAGGATTTTGTGCTAGAAAAGGGATCGTGGCAACAGAGTTGGTCCTGCATGACATTGATATTCCGAGTGCCCTTACTGATTATGTCACTGAAAATTCTATCAGCCATATCGTTGTTGGTGCATATGCTTCCCCCTGGAGTGCACTTATAAGAAGATTTAATAGAGATGTAGACGTGCCAACTAGCTTAGCAAAGTCTTTGCCAGAGTCTTGCACATTGCATGTTATATCAAAAGGAAAAGTACAAACTATCCGACCAACAGGTCATCCAGCTCCAGCTCCTCAGATTATTCAACCTCAGAATGTTAACGTCACACCAAATACATCTATGAAAGACATAGTCACTCTCTTGCAAAATGCTCCATTGGTTCACCCAAATAACTTTATTGCCAATATCCATGATTCTGAAGATATAAACAGAAAACCATTCAAAGATGCTGCCATTGCACCAGACTCTAGGAATGTTTGGGAATCTTTACGTGAAATGAAAGATGCTATGCTAATGACATCACGAAAATCCAATGAAGATACCAATTCACCAAGAGGTCCAAGACTATCAGCTGGAAGCTCCTCATCACTAAATTCATCAAATCGAACCACTCCCAACAATAGTGACAGCTCAGGGCGACTTGGTCTTCCATTGACTGATGGAAACCATGAAGTACATGGAAACTCATCAGACAGTTCTAAGAGCAACTCTTCTCCAAAGCCCCTAATAAGCTTGGAGGCAGAAATAAAGAAATTAAAACTAGAACTGAAGAAAACAACAGAGCAATATGGTATGGCTTGCAGAGAAGCTGCTTCAGCAAAACTGAAGGCAACGGAGCTTCAAAAATTTAGGCAAGAAAAAGAACGCAACGTTGAAAAAGCTAAGCTTGCTCAAGAGGCTGCATTGGCTTTGGCAGAGGTAGAGAGGCAAAAGGCCAAGGCAGCTATTGAGGCAGCAGAAGTGTCACAAATCCTAGCTCAAATGGAAACTGTAAAGAGAAAGCAAGCCGAAATAAGAGCCAAGCATGAAGAAGAAGAAAGGAGAAAAGCATTACATGAAGCTGTGGTTAATAGTATTCCATACAGAAGATACGATATTAAAGAGATTGAAGCTGCAACTAATAACTTTGACGATGCTCTGAAAATTGGTGAAGGAGGATATGGACCCGTTTTTAAAGGAGTGCTTGATCACACTGTTGTTGCCATTAAGGTCGTGAAACCAGACTTAGCCCATGGAGAGAGGCAATTTCAACAAGAGGTTCTTGTTCTAAGCACCATAAGACATCCGCACATGGTGCTCCTTCTAGGTGCATGTCCAGAGTTTGGATGCCTTGTGTATGAGTACATGGAATATGGCAGCTTAGAAGATCGTTTGTTCCAAAAAGATGACACTCCACCAATTCCATGGCAAGCTCGTTTCAAAATAGCATCAGAGATTGCCACTGGCCTTCTTTTCCTTCACCAAACAAAGCCTGAGCCTTTGGTGCACCGTGACATGAAGCCAGCAAACATTCTCTTAGACAGGAACTATGTGAGCAAGATCAGTGATGTGGGTTTGGCACGGCTTGTTCCACCTTCTGTAGCCAACAAAACCACTCAATACCGCTTGACAGGTGCAGCTGGAACATTTTGCTACATTGACCCAGAGTATCAACAAACAGGGTTGTTGGGTGTGAAATCAGACATATATTCATTAGGTGTGGTGCTGTTACAGATTATTACTGCAAAACATCCAATGGGTTTGTCCCTTTTGGTTGAGAAAGCTATCCAGACAGGGACTTTCAAAGAGATGCTTGATCCAAGAGTGGATTGGCCTATTGAAGAGACTTTGTCATTTGCTAGGTTGGCCTTAAAGTGTTGTGAGTTAAGAAAACGAGATAGACCAGATCTTGGTACTGTCATTTTGCCAGAGCTGGAACGAATATCAGAGATGTGGGACTGGGAGGACTCACTCACATTCACGGAGTAA	2181	0.4319	MQMPPSIVGPTVIAINDGRNSQQAVKWAVDHLLKKNSSCTLIHVRTKPIHHHDVDVPRNGRPPTEDELHQLFLPFRGFCARKGIVATELVLHDIDIPSALTDYVTENSISHIVVGAYASPWSALIRRFNRDVDVPTSLAKSLPESCTLHVISKGKVQTIRPTGHPAPAPQIIQPQNVNVTPNTSMKDIVTLLQNAPLVHPNNFIANIHDSEDINRKPFKDAAIAPDSRNVWESLREMKDAMLMTSRKSNEDTNSPRGPRLSAGSSSSLNSSNRTTPNNSDSSGRLGLPLTDGNHEVHGNSSDSSKSNSSPKPLISLEAEIKKLKLELKKTTEQYGMACREAASAKLKATELQKFRQEKERNVEKAKLAQEAALALAEVERQKAKAAIEAAEVSQILAQMETVKRKQAEIRAKHEEEERRKALHEAVVNSIPYRRYDIKEIEAATNNFDDALKIGEGGYGPVFKGVLDHTVVAIKVVKPDLAHGERQFQQEVLVLSTIRHPHMVLLLGACPEFGCLVYEYMEYGSLEDRLFQKDDTPPIPWQARFKIASEIATGLLFLHQTKPEPLVHRDMKPANILLDRNYVSKISDVGLARLVPPSVANKTTQYRLTGAAGTFCYIDPEYQQTGLLGVKSDIYSLGVVLLQIITAKHPMGLSLLVEKAIQTGTFKEMLDPRVDWPIEETLSFARLALKCCELRKRDRPDLGTVILPELERISEMWDWEDSLTFTE.	727

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g11716	726	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	419	519	-	-
	Seca4g11716	726	ProSiteProfiles	Protein kinase domain profile.	447	709	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g11716	726	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	12	120	-	-
	Seca4g11716	726	MobiDBLite	consensus disorder prediction	294	312	-	-
	Seca4g11716	726	Gene3D	Phosphorylase Kinase; domain 1	425	519	-	-
	Seca4g11716	726	Pfam	Universal stress protein family	12	116	IPR006016	-
	Seca4g11716	726	CDD	STK_N	10	154	-	-
	Seca4g11716	726	Gene3D	Transferase(Phosphotransferase) domain 1	520	721	-	-
	Seca4g11716	726	Coils	Coil	313	333	-	-
	Seca4g11716	726	MobiDBLite	consensus disorder prediction	245	312	-	-
	Seca4g11716	726	Gene3D	HUPs	11	132	IPR014729	-
	Seca4g11716	726	Coils	Coil	399	424	-	-
	Seca4g11716	726	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	565	577	IPR008271	GO:0004672\|GO:0006468
	Seca4g11716	726	Pfam	Protein tyrosine and serine/threonine kinase	452	704	IPR001245	GO:0004672\|GO:0006468
	Seca4g11716	726	SUPERFAMILY	Protein kinase-like (PK-like)	425	704	IPR011009	-
	Seca4g11716	726	SMART	serkin_6	447	712	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g11716	726	MobiDBLite	consensus disorder prediction	246	286	-	-
	Seca4g11716	726	Coils	Coil	351	395	-	-
	Seca4g11716	726	PANTHER	OS02G0152300 PROTEIN	12	714	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g11716	Seca-Chr4	257449477	257453426	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g11716	11	715	Receptor kinase-like Gene Family	AT1G17540	48.808	0.0	618

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Seca4g11716		PK_Tyr_Ser-Thr	1.9e-37	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g11716	-		-	gmx:100799611	923.309