Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11705 ATGAGTGTGAGTGTGGCCGAGGAAGAATCAGGTCAAGAGGTTCATGTCCCGGCTGAAATTGATTGGCATATGCTTGATAAATCCAAGTTTTTCTTCCTTGGTGCTGCTCTTTTCTCTGGGGTTTCTGCAACCCTGTACCCTGTTGTTGTGTTGAAAACCAGGCAGCAAGTGGCTCAGTCACAAGTTTCTTGTATGAAGACCGCATTGTCATTGATTAGGGGTGAGGGTTTTAGAGCATTGTATCGTGGGTTTGGGACTTCTTTGATGGGTACAATCCCTGCCAGAGCTCTATATATGGCTGCCCTTGAGGTTACCAAGAGCAATGTGGGGACTGCTACGGTTAGGTTTGGTCTTGCTGAACCAACTGCTGCTGCAATTGCCAATGCAGCTGCTGGCTTGAGTGCAGCCATGGCAGCTCAACTTGTGTGGACCCCAGTTGATGTTGTGAGCCAGAGGTTGATGGTTCAAGGTTGTTGTAATTCCAGTAATCCTAAGGCTTCTGATTTTAGATATATCAATGGGATTGATGCCTTCAGGAAAATTATGAACACAGATGGTCTTAGGGGCTTGTATAGGGGTTTTGGGATATCAATTTTGACATATGCACCTTCAAATGCAGTTTGGTGGGCTTCATATTCTGTTGCACAAAGGATGGTTTGGGGTGGAGTTGGGTACTACTTGAGCAAGAAAAGTGAGGAGGGCAGTGACACTGCATCTAATGCATTGAGGCCAGATACAAAAACTGTGATGGCAGTTCAGGGAGTCAGTGCAGCAATGGCAGGTGGAATGTCTGCTTTAATTACCATGCCATTGGATACAATCAAGACAAGACTGCAGGTCTTGGATGGTGATGAGAATGGTCGCCGTGGACCAACAATTATGCAGACAGTGAGGAATCTGGTTAGGGAAGGTGGTTGGATGGCTTGTTATAGAGGATTGGGACCTCGCTGGGCTTCAATGTCAATGTCTGCAACAACAATGATCACAACTTATGAGTTCCTAAAACGGCTTTCAGCAAAGAATCAAGAGGTCTTCACTTGA 1041 0.4592 MSVSVAEEESGQEVHVPAEIDWHMLDKSKFFFLGAALFSGVSATLYPVVVLKTRQQVAQSQVSCMKTALSLIRGEGFRALYRGFGTSLMGTIPARALYMAALEVTKSNVGTATVRFGLAEPTAAAIANAAAGLSAAMAAQLVWTPVDVVSQRLMVQGCCNSSNPKASDFRYINGIDAFRKIMNTDGLRGLYRGFGISILTYAPSNAVWWASYSVAQRMVWGGVGYYLSKKSEEGSDTASNALRPDTKTVMAVQGVSAAMAGGMSALITMPLDTIKTRLQVLDGDENGRRGPTIMQTVRNLVREGGWMACYRGLGPRWASMSMSATTMITTYEFLKRLSAKNQEVFT. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11705 346 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Seca4g11705 346 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 218 IPR018108 -
Seca4g11705 346 Gene3D Mitochondrial carrier domain 29 345 IPR023395 -
Seca4g11705 346 Pfam Mitochondrial carrier protein 37 108 IPR018108 -
Seca4g11705 346 Pfam Mitochondrial carrier protein 125 219 IPR018108 -
Seca4g11705 346 Pfam Mitochondrial carrier protein 252 341 IPR018108 -
Seca4g11705 346 PRINTS Mitochondrial carrier protein signature 83 103 IPR002067 GO:0055085
Seca4g11705 346 PRINTS Mitochondrial carrier protein signature 191 209 IPR002067 GO:0055085
Seca4g11705 346 PRINTS Mitochondrial carrier protein signature 257 279 IPR002067 GO:0055085
Seca4g11705 346 PRINTS Mitochondrial carrier protein signature 31 44 IPR002067 GO:0055085
Seca4g11705 346 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 9 343 - -
Seca4g11705 346 ProSiteProfiles Solute carrier (Solcar) repeat profile. 248 337 IPR018108 -
Seca4g11705 346 SUPERFAMILY Mitochondrial carrier 24 334 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11705 Seca-Chr4 257195807 257196847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11705 1 345 Chloroplast and Mitochondria Gene Families AT1G72820 75.575 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11705 K15121 - gmx:100784616 556.599