Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11703 ATGAAGTACTCATATAAGAAAGACTCTGGTCCATGTTCTGTCCATTTGACATCTCCTTGTGTTCTTGGATGCTCATCATGGGGGACATCTTCTGAATCTGATGTGCAACAAACATCCATGTCCAAAAGTCTGGCCATGAAAATGAGTTTTTTGCCACAACAATGTCATAAGGCTAAGCCACTGAGTTTTCAATTTCAAGACCAAGATTCTTCTTCAACTCAATCGACTGGTCAATCTTATCCAGAAACCGGTCCAGCACAATCAGGTCAAATTTCTGTCCAATATAGCAATTCTTCTGCTTGTTCAACACTTAGCAAAACTGGGGAGAAGAGTGTGGAAGGTCTCATCAGGTCATCTGTGGGGAGTCAGGATTTTACCTTCCCTCCACAACTGGGTCACAACCAATCACTTGTGCATAATGCATTCCACCATGCTGAGCCATGCTTTAGTGGCCTACTAGCTGCTCCATATGGGCCACAGCCTAATATTCATCATGCTCAACTAATAGGAATGGCTCCTGTTAGAATTCCTCTGCCACTTGATCTTAGTGAGGAACCCATATATGTGAATGCAAAGCAGTACCATGCTATTCTGAGACGGAGACAGTATCGTGCAAAGCTTGAAGCACAGAACAAACTCATCAAAGATCGGAAACCATATCTTCATGAGTCCCGCCATCTACATGCAGTGAAGAGAGCTAGAGGTGCTGGTGGACGTTTCCTGAATACCAAAAAGCTCCAAGAGTCAAAGCTTACTTCATCAAACCATGGCTTAGATACTTCCAACTGTACTCAGTTGAATCTGAGTGGAAATATGTCAGAATCTAAGGTGAATCCAGTAGAAAACTACAGAGATGGTGCTTCCACAACCACTTGTTCTGATATCACAAATGCATCTAATAGTGATGACATCTTCAGGCAACAGGAGTCAGACTACAGAATATGTGGTTACCATTCTCATATTGGAAGGAATATGCAGGTGCGCGAAAGGAGAGGAGCAGGAGAAGGTGCAATGGACTCGCGCTCACAGTATAATCCTCGCACCGTCGAAGAGGTTTTTAGGGATTTCAAGGGTCGTCGAGCTGGTCTTATCAAAGCCCTCACCACCGATGTTGAAGATTTCTATAACCAATGTGATCCTGAGAAGGAGAATTTGTGCTTATACGGGTTTCCTAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAGGTTCCACCAGAGCTTCCTGAGCCTGTGCTGGGCATTAACTTTGCCAGGGATGGCATGCAAGAAAAAGACTGGTTATCTTTAGTTGCTGTCCATAGTGATGCATGGTTACTTGCTATTGCCTTCTATTTTGGAGCCAGATTTGGGTTTGACAAGGCTGACAGGAAACGCCTTTTCAATATGATCAATGAACTGCCAACAATATTTGAAGTTGTTACTGGTGCAGCAAAGAAACAAGTTAAGGAGAAGTCATCAGTTTCAAACCACAGTGGCAGCAAATCTAAGTCCAGCTCTAAAGCAAGGGCTCCAGAATCTCAGCCTAGGCAGTCAAAGGCATTGCAATCAAAAGATGAGGATGAAGAACTGGATGAGCAAGATGATGATGAACATGGGGAGACCTTGTGTGGGGCATGTGGTGAGCATTATGGCACTGATGAATTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCATGGGAAATGTGTGAAGATCACCCCTGCAAGGGCAGAGCATATCAAGCAATACAAGTGCCCATCATGCAGTAACAAGAGAGCTCGCCCTTAA 1773 0.4416 MKYSYKKDSGPCSVHLTSPCVLGCSSWGTSSESDVQQTSMSKSLAMKMSFLPQQCHKAKPLSFQFQDQDSSSTQSTGQSYPETGPAQSGQISVQYSNSSACSTLSKTGEKSVEGLIRSSVGSQDFTFPPQLGHNQSLVHNAFHHAEPCFSGLLAAPYGPQPNIHHAQLIGMAPVRIPLPLDLSEEPIYVNAKQYHAILRRRQYRAKLEAQNKLIKDRKPYLHESRHLHAVKRARGAGGRFLNTKKLQESKLTSSNHGLDTSNCTQLNLSGNMSESKVNPVENYRDGASTTTCSDITNASNSDDIFRQQESDYRICGYHSHIGRNMQVRERRGAGEGAMDSRSQYNPRTVEEVFRDFKGRRAGLIKALTTDVEDFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINELPTIFEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKARAPESQPRQSKALQSKDEDEELDEQDDDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP. 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11703 590 Pfam PHD-finger 537 586 IPR019787 -
Seca4g11703 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 527 585 IPR013083 -
Seca4g11703 590 Pfam Alfin 348 476 IPR021998 GO:0006355|GO:0042393
Seca4g11703 590 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 185 240 IPR001289 GO:0003700|GO:0006355
Seca4g11703 590 CDD PHD_AL_plant 536 586 IPR044104 -
Seca4g11703 590 Gene3D - 183 244 - -
Seca4g11703 590 ProSitePatterns Zinc finger PHD-type signature. 537 583 IPR019786 -
Seca4g11703 590 SUPERFAMILY FYVE/PHD zinc finger 526 587 IPR011011 -
Seca4g11703 590 ProSitePatterns NF-YA/HAP2 subunit signature. 188 208 IPR018362 GO:0003677|GO:0016602
Seca4g11703 590 ProSiteProfiles NF-YA/HAP2 family profile. 183 243 IPR001289 GO:0003700|GO:0006355
Seca4g11703 590 SMART PHD_3 536 584 IPR001965 -
Seca4g11703 590 MobiDBLite consensus disorder prediction 482 530 - -
Seca4g11703 590 FunFam PHD finger alfin-like protein 529 585 - -
Seca4g11703 590 PANTHER CPG BINDING PROTEIN 345 589 IPR045104 GO:0006355|GO:0042393
Seca4g11703 590 MobiDBLite consensus disorder prediction 251 282 - -
Seca4g11703 590 MobiDBLite consensus disorder prediction 487 512 - -
Seca4g11703 590 PRINTS CCAAT-binding transcription factor subunit B signature 186 208 IPR001289 GO:0003700|GO:0006355
Seca4g11703 590 PRINTS CCAAT-binding transcription factor subunit B signature 217 240 IPR001289 GO:0003700|GO:0006355
Seca4g11703 590 ProSiteProfiles Zinc finger PHD-type profile. 534 586 IPR019787 -
Seca4g11703 590 SMART cbf3 182 243 IPR001289 GO:0003700|GO:0006355
Seca4g11703 590 MobiDBLite consensus disorder prediction 66 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11703 Seca-Chr4 257176575 257189461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11703 344 589 Alfin-like Transcription Factor Family AT3G42790 76.423 5.66e-123 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Seca4g11703 Alfin 1.8e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11703 K26274 K08064 gmx:100500765 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08863 4 211480335 211484193 Seca4g11703 4 257176575 257189461 ECH
Seca4g11703 4 257176575 257189461 Seca4g11703 4 257176575 257189461 ECH
Seca4g11703 4 257176575 257189461 Seca4g08863 4 211480335 211484193 PCT