Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11694 ATGTACAAGCATCATTCCAATGGCAAATTCCTTTTCCCAATCTTATTTGTTTGTCTCTTGTTTATTTCGAGACTGAAGGGTGAAACGGCCAACATAACGTCAGACAATGGTTCTTCATATCCAGTGATATTTCTTTCTGGCCATGCTCCTCAAATAAAACATGATGTCTTTGTTAGCTTTCGAGGTCCAGACATTCGGCAAGGTTTCCTTAGCCATTTGATTGAGGCTTTATCTCGAAAGCAAATTGATGCCTTTGTAGACTATAAGCTTCCCAAAGGAAATGAAATATCACACTCACTTCTTGCATCAATTGAAACATCCTTGATTTCTTTGGTCATATTCTCACCAAACTATGCTTCTTCTCGTTGGTGTTTGGAGGAACTTGTGAAGATAATTGATTGCAGACAAAAATATGGACAGATTGTGCTGCCTGTTTTCTACAGAGTGGACCCTACAGATGTACGCCATCAAAAAGGGACTATTGGAAATGCATTTGCTGAGCATGAAAAAGAGCATGGTTTGATGAAGGTGCTAGCTTGGAGATCTGCTTTGAAGGAATCAGCTAATATAGAAGGATTTCATTCATCAAGTTTTCTGAATGACGCTGAGCTTATTGATGAAATAGTTAAATGTGTGTTGATGAAGTTGGATCATACACACCGAGTTAACTCAAAAGAACTTGTTGGAATTGACAGACCAATCTCACATGTAGAATCATTGTTACAGTTAGAGGAAGAAGATGTTCGGGCTATTGGAATTTGGGGCATGGGTGGTATTGGTAAAACAACAATTGCAGAAGAAGTATTTAACAGACAATGTTCTAAATTCGAAAGTTGTTGTTTTATGGCTAATATAAGAGAAGAGTCAGAAAGGCATGGAATAATCTCTTTAAAGAAAAAGCTTTTCTCCACTCTGTTAGAGGAACAGGATATGAAAATTGACATGATAAATGGATTGCCTCATTTAGTTGAAAGAAGGATTCGTCGTTTGAAGGCTCTTATTGTCCTTGATGATGTCAATGAATCACAACAACTAGAAATTTTAGTTGGAGCACTTGATTGGTTTGGAGCTGGTAGTAGAATCATCATAACAACTAGAGATAAGCAAGTGCTTGCCAAAAAGGTTATTGATATATATAAGGTCAGGGCATTGGACTTTGATGAATCTTTTCAGCTTTTCAATTTGAAAGCCTTTGGACAAAATCATCTTGAAAAAGTGCACTATGAGCTATCGAAGAGGATGGTCAATTATGCTGAAGGTGTTCCATTAGCTCTTGTAATTTTAGGCAAGCTTCTTCAAGGGAAAGATAGACGAATATGGGAAAGTCAGTTAGAGAGGCTTAAAAAAGTGCCAGTTAAAGGAGTTCATGATGTTATTAGATTGAGTTACAATGATCTTGATCGTGATGAGAAGAGCATCTTTTTGGACATTGCATGCTTTTTGGATGGATTGCATTTGAAAGTTGACAACATCAAACGGCTATTGAAAGATCGTGGTTATTCAGTGGATGTTGAGTTAGAAAGGCTGAAAGATAAAGCTCTTATAACTATTTCTCAAGATAATATTGTATCAATGCATAGCATTATACAAGAAACAGCTTGGGAAATTGTTCGTGAAGAATCCATTGAAGAACCTGGAAGCCGAAGTCGACTCCTGGATGCAGATGACATTTATCAAGGGAGCGAGGCTATTAGAAGCATAGTCATTGACTTGTCGATAATTAAGGAGCTGCAGTTAAGCCCTGAAGCCTTTGCTAAGATGAGCAGACTACAATATCTGGATATTTATAGTAAGAGATCTTGTATTTTTCTCCAGGATCGAGGGGGCTTGTATTTTCCTCAAGGGCTTGAATTTTTGTCCAATGAACTAAGATATCTTCGTTGGGCACATTACCCTTTGGAATCCTTGCCATCCATGTTTACAGGTGAAAAACTTGTTGAGTTGCAATTGCAGTACAGCCGAGTGAAAAAGCTTTGGCATAACGTGCCGGATGTTGTGAATTTAAAGGTTCTTATACTCACTTTGTCCACACACCTGATGGAGCTGCCAGACTTGTCAAAGGCCACAAATCTTGCAGTAATAGATCTGCGCCTCTGTCTAAGATTGACAAGTGTGCATCCCTCTGTTTTTTCTCTCAACAAGCTTAGCAAATTGGATCTAGGTGGATGCATTTCCCTTACAAGCCTTCGAAGCAAAACCCATTTAAACTCCCTTCGTTATCTCTCCCTTGCTGGCTGCATTTCATTAAAGAAGTTCTCTGTGATCTCAAAGAATATGATAAAGTTGAATTTGGCTCTCACGGGTATCAAAAAACTTCCCCCATCAATTGGACTTCAAAGCAAACTTGAGAAGCTACTTCTTGCATACACTTACATTCAGCACTTGCCTGAAAGCATCAAGCATCTTTCAAAGCTGCGACATTTAGATTTAAGGCATTGCAGGGAGCTTAGGAGTCTGCCAGAGCTTCCATCATCACTAGAAACACTAGATGCTAGTGGATGTGTATCACTTGAGACCATAACCTTCCCTTCAACTTTCACAGAACAACTGAAGGAAAACAAGAAAAGGGTTGCATTCTGGAATTGCTTGAAATTGGATCAACATTCTGTCAAGGCTATTGGGCTGAATGCACAAACTAACATGATGAAGTTTGCATACCACCATATATCCACATTTGGGCCCAATTATGGCACCTATGTGTATCCAGGAAGCAGTGTTCCAGATTGGTTGATGTATAGGACAACAGAGAATTACATAACTGTTGATCGCTCTTTTGTTACACATTCCTCTGAACAGTTGGGCTTCATTTTCTGCTTCATTGTTCCTGAAGTCCCATCACAGGGTTTCTTTTTGAAATTCAACATTAGTGTTGGCGAAGATGAAGGTGTCCAAGTGTACTTAGACAGACCAACTCGGGGAATTACATCGGATCATGTGTATATAATGTTCGACCAAGGATGTTCTCGCTATCTTAATGCTCGAGCCAAAGATCAGCCAAAGCTTGAAATTAAGGTTACGGCTGTGTCAGGAACACTGACATCACAGTACGTGCCGTTCCTGTTGAAGGGCTTCGGGGGTGAAGAGACAAACATAGCATCTTCTTCTTCTTCGTATCCAGAGATATTTCTTTCTCCTCAAATAAAACATGATCTCTTTGTTAGCTTTCGAGGTCCAGACATTCGGCAAGGTTTCCTTAGCCATTTTTCTAAGGCTTTATCTCGAAAGCGAATTGATGCCTTTGTAGACGATAACCTTCCCAGAGGAAATGAAATATCACAATCACTTCTTGCATCAATTGAAGCATCCTTCATTTCATTGGTCATATTCTCACCAAACTATGCTTCTTCTCGTTGGTGTTTGGAGGAACTTGTGAAGATAATTGATTGCAGACAAAAATATGGACAGATTGTGCTGCCTGTTTTCTACAGATTAGACCCTACAGATGTACGCCATCAAAAAGGGACTATCGGAAATGCATTTGCTGAGCATGAAAAAGAGCATGGTTTGATGAAGGTGCTAGCTTGGAGATCTGCTTTGAAGGAATCAGCTAATATAGAAGGATTTCATTCATCAAGTTTTCTGAATGATGCTGAGCTTATTGATGAAATAATTAAACATGTGTTGATGAGGTTGAATCATGTTCCCCAAGTTAACTCAAAAGGACTGGTCGGAATTGGCAAGCCAATTTCACAAGTTGAATCATTGTTACACTCAGAGGCAAAAGATGTCCGTGCTATTGGAATTTGGGGGATGGGTGGGATGGGTAAAACAACTATTGCAGAAGAAGTATTTAATAGATTGTGTTTTGAATATGACAATTGTTGTTTCATGGCTAGTGTAAGAGAAGAGTCAGGAAGGCATGGATTAATCTATTTAAAGAAAAAGCTTTTCTCTACTCTATTAGGAGAGCATGACTTGAAAATTGACACACCAAATGGATTGCCTCATTTTGTTGAGAGAAGGCTTCGTCGTATGAAGGTCCTCATTGTTCTTGATGATGTCAATGATTCACAGCAGCTAGAAACTTTAATTGGAACACTTGATTGGTTTGGAACAGGAAGCAGAATCATCATAACAACTAGAGATAAACAAGTGCTTGCCAAAAAGGTTATTGATATATATGAGGTCAAGGCATTGGACTTTGATGAATCTTTTAGGCTTTTCAATTTGAATGCCTTTGAAAAAAATCATCTTGAAGTGGAGTACTATGAGCTATCAAAGAAGATGGTCAATTATGCCAAAGGGGTTCCATTAGTTCTTAAAGTTTTAGGCCATCTTCTTCGTGGGAAAGATAAAAAAATATGGGAAAGTCAGTTAGAGAGGCTTAAAAAAGTGCAAATTAAAAAAGTTCATGATATTATTAGATTGAGTTACAATGATCTTAATCATGATGAAAAGAAGATATTTTTGGACATTGCATGTTTTTTACATGGATTGCATATGAGAGTTGACAACATAAAACTGCTACTGAAAGATCGTGGTTATTCAGTGGATGTTGAGTTAGAAAGGCTGAAAGATAAAGCTCTTATAACTATTTCTCAAGATAATATTGTATCAATGCATAGCATTATACAAGAAACAGCTTGGGAAATTGTTCGTGAAGAATCCATTGAAGACCCTGGAAACCAAAGTAGACTATGGGATCCTGATGACATTTACCGAGTACTGAAAAATAACAAGGGGAGTGAGGCTATTAGAAGCATAGCCATCAACTGGTCCATAATTAAGAAGCTGCAGTTAAGTCCTCAAGTCTTTGCAAAGATGAGCAAATTGCAATATCTGGACATTTATAGTAAAGGGTCTTGTATCTTGGATAGAGGTGGCTTGAATCTTACTCAAGGGCTTGAATATTTGCCAAATGAGCTCACATTTCTTCGTTGGGTGCATTATCCATTGGAATCCTTGCCATCCAAGTTTTCTGGGGAAAAGCTTGTTGATCTTGTGAATTTAAAGGTTCTTATACTCAGTTTATCTTCACACTTGGTGGAGTTTCCAGACTTGTCAAAGGCCACAAATCTTGCAGTAATAGATCTGCGTCTCTGTCCTTCCAAGCAATATCCATCTAAGCTCCCTTCGTTACCTCTCCCTAGCTGGTTGCCTTTCACTAAAGGAATTCTCAGTGACCTCAAAGAATATGAAGAAATTGAATCTACAACTCACAGGGAGCTTAGGAGTCTGCCAGAGCTTCCATCATCACTAGAAACACTAGATGCTAGTGGATGTGTATCACTTGAGACCATAACCTTCCCTTCAACATTAACAGAACAACTGAAGGAAAACAAGAAAAGGGTTGCATTCTGGAATTGCCTGAAATTGGATCAACATTCTCTCAAGGCTATTGGGCTGAATGCACAAATTAACATGATGAAGTTTGCATACCACCATATATCCACATTTGGGCCCAATTATGGAACCTATGTGTATCCAGGAAGCAGTGTTCCACATTGGTTGGTGTATAGGACAACAGAGAATTACATAACTGTTGATCTATCTTTTGTTACACATTCCTCTGAACAGTTGGGCTTCATTTTTTGCTTCATTGTTCCAAAAGTCACATCAGATGGTTTGATTTTGATATTTAACATCAATGCTGGTGAAGGGGAAGGTAATGGAATTAATGTGTACTTGGATAGGCCAAGTCGTGGGATTAAATCAGATCATGTGTATCTAATGTATGACAAGGGATGTTCTCACTACCTAATTAGCAGAGCCAAACATCAACCAAAGTTTAAAATTAAGGTTACAGCAGTTTCTGGAACACTGACATCACTGTACGTGCCTTTGTTGATACGAGGGTTCGGTCTCATCCCAATAAATACATCAGAATATTTCAATTTGATTCAGCAAATGGAATTGGCTGATGATCGTGCTCCGAATACCCCAGCACCTCTCTCTCACTCAGCTAAGCTTTCCTCCTTCGTTCTTCACTTCCCTACTCCACTGATCGTTTCACCGGCGCCAACCGTCGACGTTTCATCCTCTGTGTGA 5988 0.3888 MYKHHSNGKFLFPILFVCLLFISRLKGETANITSDNGSSYPVIFLSGHAPQIKHDVFVSFRGPDIRQGFLSHLIEALSRKQIDAFVDYKLPKGNEISHSLLASIETSLISLVIFSPNYASSRWCLEELVKIIDCRQKYGQIVLPVFYRVDPTDVRHQKGTIGNAFAEHEKEHGLMKVLAWRSALKESANIEGFHSSSFLNDAELIDEIVKCVLMKLDHTHRVNSKELVGIDRPISHVESLLQLEEEDVRAIGIWGMGGIGKTTIAEEVFNRQCSKFESCCFMANIREESERHGIISLKKKLFSTLLEEQDMKIDMINGLPHLVERRIRRLKALIVLDDVNESQQLEILVGALDWFGAGSRIIITTRDKQVLAKKVIDIYKVRALDFDESFQLFNLKAFGQNHLEKVHYELSKRMVNYAEGVPLALVILGKLLQGKDRRIWESQLERLKKVPVKGVHDVIRLSYNDLDRDEKSIFLDIACFLDGLHLKVDNIKRLLKDRGYSVDVELERLKDKALITISQDNIVSMHSIIQETAWEIVREESIEEPGSRSRLLDADDIYQGSEAIRSIVIDLSIIKELQLSPEAFAKMSRLQYLDIYSKRSCIFLQDRGGLYFPQGLEFLSNELRYLRWAHYPLESLPSMFTGEKLVELQLQYSRVKKLWHNVPDVVNLKVLILTLSTHLMELPDLSKATNLAVIDLRLCLRLTSVHPSVFSLNKLSKLDLGGCISLTSLRSKTHLNSLRYLSLAGCISLKKFSVISKNMIKLNLALTGIKKLPPSIGLQSKLEKLLLAYTYIQHLPESIKHLSKLRHLDLRHCRELRSLPELPSSLETLDASGCVSLETITFPSTFTEQLKENKKRVAFWNCLKLDQHSVKAIGLNAQTNMMKFAYHHISTFGPNYGTYVYPGSSVPDWLMYRTTENYITVDRSFVTHSSEQLGFIFCFIVPEVPSQGFFLKFNISVGEDEGVQVYLDRPTRGITSDHVYIMFDQGCSRYLNARAKDQPKLEIKVTAVSGTLTSQYVPFLLKGFGGEETNIASSSSSYPEIFLSPQIKHDLFVSFRGPDIRQGFLSHFSKALSRKRIDAFVDDNLPRGNEISQSLLASIEASFISLVIFSPNYASSRWCLEELVKIIDCRQKYGQIVLPVFYRLDPTDVRHQKGTIGNAFAEHEKEHGLMKVLAWRSALKESANIEGFHSSSFLNDAELIDEIIKHVLMRLNHVPQVNSKGLVGIGKPISQVESLLHSEAKDVRAIGIWGMGGMGKTTIAEEVFNRLCFEYDNCCFMASVREESGRHGLIYLKKKLFSTLLGEHDLKIDTPNGLPHFVERRLRRMKVLIVLDDVNDSQQLETLIGTLDWFGTGSRIIITTRDKQVLAKKVIDIYEVKALDFDESFRLFNLNAFEKNHLEVEYYELSKKMVNYAKGVPLVLKVLGHLLRGKDKKIWESQLERLKKVQIKKVHDIIRLSYNDLNHDEKKIFLDIACFLHGLHMRVDNIKLLLKDRGYSVDVELERLKDKALITISQDNIVSMHSIIQETAWEIVREESIEDPGNQSRLWDPDDIYRVLKNNKGSEAIRSIAINWSIIKKLQLSPQVFAKMSKLQYLDIYSKGSCILDRGGLNLTQGLEYLPNELTFLRWVHYPLESLPSKFSGEKLVDLVNLKVLILSLSSHLVEFPDLSKATNLAVIDLRLCPSKQYPSKLPSLPLPSWLPFTKGILSDLKEYEEIESTTHRELRSLPELPSSLETLDASGCVSLETITFPSTLTEQLKENKKRVAFWNCLKLDQHSLKAIGLNAQINMMKFAYHHISTFGPNYGTYVYPGSSVPHWLVYRTTENYITVDLSFVTHSSEQLGFIFCFIVPKVTSDGLILIFNINAGEGEGNGINVYLDRPSRGIKSDHVYLMYDKGCSHYLISRAKHQPKFKIKVTAVSGTLTSLYVPLLIRGFGLIPINTSEYFNLIQQMELADDRAPNTPAPLSHSAKLSSFVLHFPTPLIVSPAPTVDVSSSV. 1996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11694 1995 Gene3D Ribonuclease Inhibitor 758 854 IPR032675 -
Seca4g11694 1995 SUPERFAMILY L domain-like 565 838 - -
Seca4g11694 1995 SUPERFAMILY Toll/Interleukin receptor TIR domain 50 192 IPR035897 -
Seca4g11694 1995 Gene3D - 1046 1208 IPR035897 -
Seca4g11694 1995 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1209 1472 IPR027417 -
Seca4g11694 1995 FunFam Disease resistance protein (TIR-NBS-LRR class) 50 218 - -
Seca4g11694 1995 Gene3D - 383 467 IPR042197 -
Seca4g11694 1995 Gene3D - 1378 1462 IPR042197 -
Seca4g11694 1995 Gene3D - 1209 1374 IPR027417 -
Seca4g11694 1995 Gene3D - 51 218 IPR035897 -
Seca4g11694 1995 Gene3D Ribonuclease Inhibitor 1556 1767 IPR032675 -
Seca4g11694 1995 Gene3D Ribonuclease Inhibitor 530 757 IPR032675 -
Seca4g11694 1995 Pfam NB-ARC domain 240 459 IPR002182 GO:0043531
Seca4g11694 1995 Pfam NB-ARC domain 1233 1459 IPR002182 GO:0043531
Seca4g11694 1995 SUPERFAMILY "Winged helix" DNA-binding domain 1448 1557 IPR036390 -
Seca4g11694 1995 ProSiteProfiles TIR domain profile. 52 216 IPR000157 GO:0007165
Seca4g11694 1995 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 54 836 IPR044974 GO:0006952
Seca4g11694 1995 SUPERFAMILY L domain-like 1573 1749 - -
Seca4g11694 1995 Gene3D - 219 378 IPR027417 -
Seca4g11694 1995 SMART till_3 53 190 IPR000157 GO:0007165
Seca4g11694 1995 SMART till_3 1048 1185 IPR000157 GO:0007165
Seca4g11694 1995 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 477 IPR027417 -
Seca4g11694 1995 ProSiteProfiles TIR domain profile. 1047 1211 IPR000157 GO:0007165
Seca4g11694 1995 SUPERFAMILY Toll/Interleukin receptor TIR domain 1043 1187 IPR035897 -
Seca4g11694 1995 SUPERFAMILY "Winged helix" DNA-binding domain 455 557 IPR036390 -
Seca4g11694 1995 PRINTS Disease resistance protein signature 800 816 - -
Seca4g11694 1995 PRINTS Disease resistance protein signature 418 432 - -
Seca4g11694 1995 PRINTS Disease resistance protein signature 250 265 - -
Seca4g11694 1995 PRINTS Disease resistance protein signature 326 340 - -
Seca4g11694 1995 FunFam Disease resistance protein (TIR-NBS-LRR class) 1045 1213 - -
Seca4g11694 1995 Pfam TIR domain 1048 1223 IPR000157 GO:0007165
Seca4g11694 1995 Pfam TIR domain 53 228 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11694 Seca-Chr4 257022880 257038287 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11694 54 845 WRKY Transcription Factor Family AT4G12020 34.155 4.35e-111 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11694 - - gmx:100802823 1368.6