Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11690 ATGGATGCATCTTTAAGGTCTGCTACTGAACAAGGGAAAGAAAAGCACCGTCCAATACTAGGAAGCACAACTGAGATACGGCAGGAATTGAGGCCAAAAAGGGCAGATCCTTCAGAGGACAATATAGTTACTGTTCCCACTGCTAAAGGTGGAATGAGGAGGAAACATCATCGGGCATGGACTCTTGTTGAGGTAATGAAATTGGTGGAAGGTGTGTCACGGTGTGGAGCAGGGAGGTGGTCTGAGATCAAACGACTCTCCTTTTCGTCATACTCATATCGTACCTCAGTTGATCTTAAGGACAAGTGGAGGAATTTGCTCAAAGCTAGCTTTGCACAGGCACCTGCAGATGATGGGATGAATTCTCGGAAGCATGGTACAGTTCCGATTCCAGAGCCAATTTTAGTACGTGTAAGAGAGCTTGCTGAGTTGAATTCTCAGGTGCCTCCAAACAAATTAACAGGTGGTGCAGGGAACGTGCATGGAGATAGATCAGGGTACTTGTAG 507 0.4635 MDASLRSATEQGKEKHRPILGSTTEIRQELRPKRADPSEDNIVTVPTAKGGMRRKHHRAWTLVEVMKLVEGVSRCGAGRWSEIKRLSFSSYSYRTSVDLKDKWRNLLKASFAQAPADDGMNSRKHGTVPIPEPILVRVRELAELNSQVPPNKLTGGAGNVHGDRSGYL. 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11690 168 CDD SANT_TRF 58 108 - -
Seca4g11690 168 MobiDBLite consensus disorder prediction 148 168 - -
Seca4g11690 168 SMART sant 56 109 IPR001005 -
Seca4g11690 168 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 111 IPR017930 -
Seca4g11690 168 SUPERFAMILY Homeodomain-like 54 112 IPR009057 -
Seca4g11690 168 MobiDBLite consensus disorder prediction 7 38 - -
Seca4g11690 168 Pfam Myb-like DNA-binding domain 59 107 IPR001005 -
Seca4g11690 168 MobiDBLite consensus disorder prediction 1 44 - -
Seca4g11690 168 Gene3D - 47 154 - -
Seca4g11690 168 ProSiteProfiles Myb-like domain profile. 60 107 IPR001005 -
Seca4g11690 168 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 22 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11690 Seca-Chr4 256963529 256965883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11690 58 107 Single Myb Histone (SMH) Gene Family AT1G15720 48.000 4.76e-06 43.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca4g11690 Myb_DNA-binding 7.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11690 - - tpra:123883109 254.988