Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11685 ATGGGTAGACGTCCATGCTGTCCCAAAGAGATCAACAAAGGTGCTTGGTCTCGCGAAGAAGATCAAACCCTCTCCAAATATGTCACCATTCATGGAGAAGGCAAATGGCAGAAGGTTGCTCAAAATGCAGGTTTGAAGCGGTGTGGAAAGAGTTGCAGACAAAGATGGTTGAATTATCTGAAGCCTGGTATCAAGAGAGGCGACATCTCTGTCGATGAAGAGGATATGATCATAAGACTTCATCGTCTTCTTGGTAACAGATGGGCTTTGATAGCAAAGAGGTTACCGGGACGAACAGACAATGAAATCAAGAACTACTGGAATACTAATCTGTCAAAGAAGTTACAGAAGCAGAAATGTGAAGAACAGAAAACCAAACACAAAAAAATCCATGTACCACCTGAGGCTCCACGGCCTAGGAGAGTTGCTCAATGCAATAAAAGAAGAATTTTGGAGAATAATGGGTGTGACTCTGATGATAGAGATCCTCCAAATAAAATAGAGGGCAATGATGAAGCTTCAATCACTGATTTCCTCATTGATATTGATCAAAACCAAATGCTGATTAATGCTGATGATTCCTCCAACTCAAAGCTCCCACAAATCAACAAGGAGAGTACTCCTACCTCATCACTTAATTCTGATCATTATTGTCACCCCTTATCAGAGAAATTTGACCCTCTGGAGACCCTTTTGGATGTGGAGCTCAAGAAGATGGCTTCCTTTCTTGGACTAGAAAGTAATTGA 747 0.415 MGRRPCCPKEINKGAWSREEDQTLSKYVTIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGDISVDEEDMIIRLHRLLGNRWALIAKRLPGRTDNEIKNYWNTNLSKKLQKQKCEEQKTKHKKIHVPPEAPRPRRVAQCNKRRILENNGCDSDDRDPPNKIEGNDEASITDFLIDIDQNQMLINADDSSNSKLPQINKESTPTSSLNSDHYCHPLSEKFDPLETLLDVELKKMASFLGLESN. 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11685 248 Coils Coil 247 248 - -
Seca4g11685 248 CDD SANT 70 111 IPR001005 -
Seca4g11685 248 MobiDBLite consensus disorder prediction 191 215 - -
Seca4g11685 248 FunFam MYB-related transcription factor 12 65 - -
Seca4g11685 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Seca4g11685 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Seca4g11685 248 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Seca4g11685 248 CDD SANT 15 60 IPR001005 -
Seca4g11685 248 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Seca4g11685 248 MobiDBLite consensus disorder prediction 121 170 - -
Seca4g11685 248 Gene3D - 7 66 - -
Seca4g11685 248 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Seca4g11685 248 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Seca4g11685 248 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Seca4g11685 248 MobiDBLite consensus disorder prediction 121 168 - -
Seca4g11685 248 Gene3D - 70 134 - -
Seca4g11685 248 FunFam Transcription factor TT2 69 136 - -
Seca4g11685 248 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 190 - -
Seca4g11685 248 SMART sant 12 62 IPR001005 -
Seca4g11685 248 SMART sant 65 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11685 Seca-Chr4 256882867 256884328 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11685 1 115 MYB Transcription Factor Family AT2G16720 63.793 3.38e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g11685 Myb_DNA-binding 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11685 K09422 - gmx:547568 327.405