Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11684 ATGGGAAGAAGTCCTTGTTGTTCTAAGGAAGGCTTGAACAAAGGAGCATGGACAGCCACTGAAGACAAAATTCTCACAGAATACATTAAGATTCATGGCGAAGGAAAATGGAGACACCTTCCTAAAAGAGCAGATATAATGTGGCTTGGTGCAGGTCTCAAAAGATGTGGGAAAAGTTGCAGGCTAAGATGGTTGAATTATCTAAGACCTGGCATTAAAAGAGGAAATATTACTAATGATGAAGAGGAACTTATAATCAGGCTTCACAACCTTCTTGGAAACAGGTGGTCCTTGATTGCTGGACGGCTTCCAGGACGAACAGACAATGAAATAAAGAACTATTGGAACACCAACATTGGAAGGAAGCTTCAAAATAATGGAACCATTAATATTGCAAGTGGTGCACGAAACTCCTCAGTTGAACAACGGAACATGAAACAAAGTACACAAGATCAGTGGCACTATACACAAAATAATAAGGGTTCTTCAGCTTGTTATGTGGTCCAGACAAAAGCAACAAGGTGGAGTTCTAAGACCACAATCATCACTCAACAAAATGAAGGGATAGACCTTGATAACAAATTAATGAAGGGAGAATCACCACCAGTGTCTTCACCTTCAGACAATAACAACAATGTCAATGTCAATGCCAATGTTGACCCTTTGGATTTCATGGCAGATTTTGAGATGGATGGCAATTTCTTTTCGGAGCTTCTCAAGATGGATATACCTAATTCAGAACCATCTTGTTTGGAAAATAAGATACAGAAGATGGAAGATCATCATAATGGTGGTAACCCTAGCACACTTGACAAAGGTCATTTATCTCCAAAATCTTACAATGATACTCCCAGCTGCCCCTTCCTTTGGGCTGATTCATTTTCATATGATACAGGTTTTGATTTTCAACCAATGGCAACTTTTGTCGAGTCCGGATTTGATTGGCTTTGA 951 0.3954 MGRSPCCSKEGLNKGAWTATEDKILTEYIKIHGEGKWRHLPKRADIMWLGAGLKRCGKSCRLRWLNYLRPGIKRGNITNDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGRKLQNNGTINIASGARNSSVEQRNMKQSTQDQWHYTQNNKGSSACYVVQTKATRWSSKTTIITQQNEGIDLDNKLMKGESPPVSSPSDNNNNVNVNANVDPLDFMADFEMDGNFFSELLKMDIPNSEPSCLENKIQKMEDHHNGGNPSTLDKGHLSPKSYNDTPSCPFLWADSFSYDTGFDFQPMATFVESGFDWL. 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11684 316 CDD SANT 78 119 IPR001005 -
Seca4g11684 316 SUPERFAMILY Homeodomain-like 12 115 IPR009057 -
Seca4g11684 316 MobiDBLite consensus disorder prediction 258 277 - -
Seca4g11684 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Seca4g11684 316 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 199 - -
Seca4g11684 316 SMART sant 73 121 IPR001005 -
Seca4g11684 316 SMART sant 13 70 IPR001005 -
Seca4g11684 316 Pfam Myb-like DNA-binding domain 14 68 IPR001005 -
Seca4g11684 316 Pfam Myb-like DNA-binding domain 74 117 IPR001005 -
Seca4g11684 316 Gene3D - 76 160 - -
Seca4g11684 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 68 IPR017930 -
Seca4g11684 316 ProSiteProfiles Myb-like domain profile. 9 68 IPR001005 -
Seca4g11684 316 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Seca4g11684 316 Gene3D - 14 73 - -
Seca4g11684 316 FunFam MYB-related transcription factor 13 73 - -
Seca4g11684 316 CDD SANT 16 68 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11684 Seca-Chr4 256842548 256844529 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11684 1 127 MYB Transcription Factor Family AT2G16720 70.866 4.92e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g11684 Myb_DNA-binding 2.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11684 K09422 - gmx:100809225 369.777