Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11682 ATGAGCAACTGGTTGGGATTCTCTCTGACTCCACACCTGAGGATTGATGAAGAATTTGGGAGAGAAAGCCAAGACCGTGGAGGAGGAGGAGGAGGCTATCCTTCTTCTCATCCTCACTTGTCTCCTCCTCCTCACTTGTCTGTCATGCCTTTGCGCTCTGATGGCTCACTTTGTGTTGCTGACTCCTTTAGGCACTCTGAAGGTATTGCAGAATGGAGATATGATAATGCAATAGGTGGAGGAAATTCAAATGAAGAAGGTCCAAAGCTTGAAGACTTCTTGGGTTGTTACTCAAACTCTCCCCTGGCTGAAACCAAAGTCTTCTGCCAAGGCTCCCAACATGACCAAAACCAGAATAATATTTCCAAAATCAATGTTAATGTGGCCCCAAGCTTTTGCACCAATACTGAAATTGAAACTGGGGAGAACCTCACACACCCTTCTTCCTTGCTCCAGTCTTTCCATGCATATAGTGATAACCCACATGCCCTCATCCCCAACAATACCATGTACAAGTCCTGGTTGGCTCAAACTCAGTTTTCTGATGGAAAACCTTCAGCTGAGGCAAATGGGTGTAATTTCCAATCTCTGTCCTTGACTATGAGCCCCAGTGTACAAAATGGGGTGGGTGCAATTTCCCCTGTTCCAGTGAATGAAGACACTCGTAAAAGGTCTTTGGCAAAATCTCATGCTAGAGAACCTGTCCCTCGCAAATCTATTGATACTTTTGGGCAGAGAACATCTCAATATCGTGGTGTTACAAGGCATAGATGGACTGGGAGATATGAGGCCCATTTGTGGGATAATAGTTGCAGAAAGGAAGGGCAAACAAGGAAAGGAAGGCAAGTATTATTAGGTGGTTATGATAAAGAAGAAAAAGCAGCAAGGGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTGGAAGAGATGAAGCACATGACCAGACAAGAATTTGTCGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGGGCATCTGTGTATAGAGGCGTGACAAGACACCATCAACATGGAAGGTGGCAGGCTCGTATAGGAAGGGTTGCAGGGAACAAGGACTTGTATCTTGGTACATTTAGCACACAAGAAGAAGCTGCTGAAGCATATGACATAGCAGCAATCAAGTTCAGGGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGATGTGAAGAGAATTTGCTCAAGCTCAACTCTAATTGCAGGAGATCTTGCAAAACGGTCTCCAAAAGACACAGCTCCAGCCACTGCTGAGGACTCAAATGCATCTGGTTCATCTGCACCTTCTCAGCCACCTCCTTTGGCCATAACTGAAGGTGAACATTCTGATGAGTTGTCCAACATGGTGTGGAATGCCAACAGTGATGAGCAACCACAGAGTGAGTATGGAAACACCAATGTCACTGAATCATCACAGCAGGTTTCACCAAGCAACAAGAATGCAATGAACCCTCAAAGCCCCAAGAGTTCTGTGGGACTACCAAATGAGTTTGGAGTGAGTGGAGGAGCAGATTATGGACATGGGTACTTCACCCTGCATGGACCAAAATATGATGATGATGGAAGCAATGAAAATGACCACATGAACACCAACAGACTTGGAAATTTGGGTTTGGTTAATCAAGTTCCTATGTTTGCTTTATGGAATGAATGA 1728 0.445 MSNWLGFSLTPHLRIDEEFGRESQDRGGGGGGYPSSHPHLSPPPHLSVMPLRSDGSLCVADSFRHSEGIAEWRYDNAIGGGNSNEEGPKLEDFLGCYSNSPLAETKVFCQGSQHDQNQNNISKINVNVAPSFCTNTEIETGENLTHPSSLLQSFHAYSDNPHALIPNNTMYKSWLAQTQFSDGKPSAEANGCNFQSLSLTMSPSVQNGVGAISPVPVNEDTRKRSLAKSHAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVLLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKDTAPATAEDSNASGSSAPSQPPPLAITEGEHSDELSNMVWNANSDEQPQSEYGNTNVTESSQQVSPSNKNAMNPQSPKSSVGLPNEFGVSGGADYGHGYFTLHGPKYDDDGSNENDHMNTNRLGNLGLVNQVPMFALWNE. 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11682 575 PRINTS Ethylene responsive element binding protein signature 391 411 IPR001471 GO:0003700|GO:0006355
Seca4g11682 575 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700|GO:0006355
Seca4g11682 575 FunFam AP2-like ethylene-responsive transcription factor ANT 248 317 - -
Seca4g11682 575 ProSiteProfiles AP2/ERF domain profile. 351 409 IPR001471 GO:0003700|GO:0006355
Seca4g11682 575 MobiDBLite consensus disorder prediction 430 463 - -
Seca4g11682 575 MobiDBLite consensus disorder prediction 439 457 - -
Seca4g11682 575 SUPERFAMILY DNA-binding domain 248 317 IPR016177 GO:0003677
Seca4g11682 575 Pfam AP2 domain 350 401 IPR001471 GO:0003700|GO:0006355
Seca4g11682 575 Pfam AP2 domain 249 307 IPR001471 GO:0003700|GO:0006355
Seca4g11682 575 SMART rav1_2 351 415 IPR001471 GO:0003700|GO:0006355
Seca4g11682 575 SMART rav1_2 249 321 IPR001471 GO:0003700|GO:0006355
Seca4g11682 575 MobiDBLite consensus disorder prediction 479 522 - -
Seca4g11682 575 Gene3D AP2/ERF domain 248 317 IPR036955 GO:0003700|GO:0006355
Seca4g11682 575 Gene3D AP2/ERF domain 351 411 IPR036955 GO:0003700|GO:0006355
Seca4g11682 575 SUPERFAMILY DNA-binding domain 350 411 IPR016177 GO:0003677
Seca4g11682 575 ProSiteProfiles AP2/ERF domain profile. 249 315 IPR001471 GO:0003700|GO:0006355
Seca4g11682 575 MobiDBLite consensus disorder prediction 21 46 - -
Seca4g11682 575 FunFam AP2-like ethylene-responsive transcription factor 350 411 - -
Seca4g11682 575 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 85 491 - -
Seca4g11682 575 CDD AP2 350 411 IPR001471 GO:0003700|GO:0006355
Seca4g11682 575 MobiDBLite consensus disorder prediction 479 518 - -
Seca4g11682 575 CDD AP2 248 317 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11682 Seca-Chr4 256824501 256828400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11682 1 434 AP2-EREBP Transcription Factor Family AT1G72570 50.840 5.17e-138 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Seca4g11682 AP2 4.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11682 K09285 - gmx:100805489 942.954