Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11680 ATGATGAGTGCAAATGCAAGAAATAGGTCCCCTTTCACAGCAATTCAGTGGCAAGAACTTGAACAACAAGCTCTTGTTTTCAAATACATGGTTACAGGAACACCTATTCCACCAGATCTCATCTACTCTATCAAAAGAAGTCTAGACACTTCAATGTCTTCAAGGCTCTTCCCACATCATCCAATTGGGTGGGGATGTTTTGAAATGGGTTTTGGCAGAAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGCTCAAAGGAAGCATATCCAGACTCCAAGTACTGTGAAAGACACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGTTTCTTCATCAACATGCACCGCCACAAACACCTCCCAAACAAACCCATCCTCTTATAACAGAAACCTTTCCTTGACCAACCCCAACATAACTCCACCCTCTTCTTTCCCTTTCTCTCCACTCCCCTGTGACTCCCAGCCCTTTTCCCAATCTTACCAAAACTCTTCTCTAAATCCCTTCTTTTACTCCCAATCAACCTCTTCTAGACCCCCTGATTCTGATTTCCCACCTCAAGATGCCACAACCCACCAGCTATTTATGGACTCTGGGTCTTATTCTCAGGAAGACAAGGATTATAGGCATGTACATGGAATAAGGGAGGGTGTGGATGAGAGAGCTTTCTTCCCTGAAGCTTCAGGGTCTTCTAGGAGCTATCCTGACTCATATCAGCAGCTATCAATGAGCTCTTACAAGCCCTATTCAAACTCCCATTTTCAGGACATCAATGATAACCCAAGACAGCAAGAGCAGCACTGCTTTGTTTTGGGGACTGATTTCAAATCAACAAGACCAAGCAAAGAGAAAGAAACTGAAACAACTCAAAAATCCCTTCACCACTTCTTTGGGGAGTGGCCACCAAAGAACACAGATTCCTGGCTAGATCTTGCTTCCAATTCCAGAATCCCAACCGATGAATGA 996 0.4448 MMSANARNRSPFTAIQWQELEQQALVFKYMVTGTPIPPDLIYSIKRSLDTSMSSRLFPHHPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEVSSSTCTATNTSQTNPSSYNRNLSLTNPNITPPSSFPFSPLPCDSQPFSQSYQNSSLNPFFYSQSTSSRPPDSDFPPQDATTHQLFMDSGSYSQEDKDYRHVHGIREGVDERAFFPEASGSSRSYPDSYQQLSMSSYKPYSNSHFQDINDNPRQQEQHCFVLGTDFKSTRPSKEKETETTQKSLHHFFGEWPPKNTDSWLDLASNSRIPTDE. 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11680 331 MobiDBLite consensus disorder prediction 317 331 - -
Seca4g11680 331 ProSiteProfiles QLQ domain profile. 11 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca4g11680 331 PANTHER GROWTH-REGULATING FACTOR 5 10 319 IPR031137 GO:0005634|GO:0006351|GO:0032502
Seca4g11680 331 Pfam QLQ 11 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca4g11680 331 MobiDBLite consensus disorder prediction 117 151 - -
Seca4g11680 331 MobiDBLite consensus disorder prediction 107 158 - -
Seca4g11680 331 MobiDBLite consensus disorder prediction 283 331 - -
Seca4g11680 331 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Seca4g11680 331 MobiDBLite consensus disorder prediction 287 302 - -
Seca4g11680 331 Pfam WRC 77 119 IPR014977 -
Seca4g11680 331 MobiDBLite consensus disorder prediction 178 202 - -
Seca4g11680 331 SMART QLQ_2 10 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11680 Seca-Chr4 256760072 256762792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11680 3 309 GRF Transcription Factor Family AT3G13960 41.096 8.49e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Seca4g11680 WRC 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11680 - - aprc:113851425 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11680 4 256760072 256762792 Seca4g11680 4 256760072 256762792 ECH