Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11672 ATGAATTGGGTTGAGTTACTTTTCTGGATTGCATTGACTGCAATATTGTTTGTTTCTGTGGCCCTTGATTGTCTTGTCATTTTCTATGAAGATAAAGTTAAATGGATAAAGAGAAAATTGGAGTTACTAGAAGCTCTGACAAAGGATTATGATCAACTTGTGAAGAAACGGGACGAAGTAGAATCAGGAGTCCGTCATCTCTGGGAATTAGAAGACCTATCTGGTGGAATTCATCTGCAGCTAAGTGGAACTGAGAATGAATGGGTAAAATCAACAGGAGAAGTGGTTAGTAAAGCAAAACGTTGTGTCGCCAGGTACGAAAGACATTCCCTCGGACCGCTTCTTGGTATTATTACAGCTATCTTTAGATCGATGCCCATTATATCTGTTATCTGTGAAATAGAATCTGTCAAAAGGGAGATGAGAGATCATTTACAAAAGAAAGATGAGAAGGCCAAGGAAATCTCTAAATCTATGGAGAATTCAAGATCTCTGCTGGATCAATATAAATATATAATTGAAGAGGCCGATAAATCTGTAGCAGCTCAAAACCAAAAGCAGAAGCAGCCTTCTACAAGTTTTGAAGAATTGATGAAGAAGGGCGAACACATATTTTCCACAATGGAAGAGAGAAGGTCTATATATCTACTGCTTCCACTGCATGCTTTCGTGAAGGATTTGAGTCAGCTTCAGTTAGAAACTGAAACAGAAAAGCTCTGGAAAAAAGAAGCGGAAGAAGTAATTGAAGATGCAGAGACCCTTATTAACAACTACTTATGGTGGTTTGACTGGTTTCCAATTTTTAGCATATTGAAGAAATTCAAGATGCCTATTCTCATTGTTACGCATCAATTCAGAAAGGGAATGAGGCGCATTGTCACTGAGTTTGATGGCCTGCTTAAGAGGAAGGAGAAGTATAATTTAGCTTTTATTGATAGAGCTGCAGAAAAGTCAATCTTCCCATCTATTATAGATGACAAAGAAATCACACCAGCCATGAAAAGCATCCACAGCAAGCTGAACAATCTGCAGAAAAGCTCAAAGCGTGAACCTGAAATGAACTCAGTCTGTCATGCATTGGAAGAAATGTATAAGCAGCTTCAGAAAGCAGAAGAAACAGCTGGGAGAAATGCTTGTGTAGAGCAACTAAAGTCCATTGCTCAGGAGGTGGACAATTTACTAGAAAGGTACATGAATGAACCTGAGCTCAAACGTCAAGAGATCAAAAATGCTACTGATCTTCTTCAGAAAATAATAAGAATTTGCAGCATCAAAAGACAGAAATCAACCAAAGTAGTTGGTTTGAAAAATGAAGTACGAGATTTGGTCTCCAAGCTGACAACAAGCAGTGACAATCCTTCGACACTTTCCATTGTAGGGATGAAAGGTGTGGGGAAGACAACTCTGGCAAAGGCAGTTTATTACAAAAAAGCTGTTGTCGAGCACTTCCCTATCCGTGTCTGGGTGACGGTAACTGAAGGAGCAGCAACCAGAGCACAAGTTCTGCTGATGGACAAGCATGGGACTAAAGACCAGACATTGGATGTCACTCAGGTAAAAGATCACTTGAAAGAGAAGCTATGCCTCGTTGTTTTAGATAATGTCTCCAAAACAGAAGATTTTGACAAACTAGATGAAACATTATCTGGATCTGGATGGACAAATGGGAGCAGGATAGTGCTGACAACACGCTCTAAGAATGTGGCTTCGCATGCTGACAGTAGTAGCACCCTTCACCACATTCACATTCGACTACTAACTATGGAAGAGAGTTGGGCGTTGTTTGTGAAAGTGGCCGGCTTTGAAAAGAAAGTATTAGAACCAAAAGTGGAAAAATTTGCAAGAAAGGTAGTGGGAAGATGTGGGGGGTTACCACATGAAATCTTATCTCTTGGGTGTGTCATGCCAGCGAAGGATATAACTCAAGAGAACAACCGATCGTGGGTGCTTTCTCGAATCAATCATGGCCGTCACAGAGAACATTGGCAGCAGGCTTGGGAAAAGAACAGAGAAGAACTGATGAGAGGAACTCTGATTGAATATCTCAATTACTTCACACACTTCCCTGTAGACTTTGAAATCCCAGCGAGGAGATTAGTCAATCTATGGGTTGCAGAAGGACTGGTGCAACAAAACGACCAACAAACACCCGAAGACACTGCAGAAGGGTATCTAAAAGAGTTGAGAGACCGCAACATGATTCAAGTAGTGGCACTAAAGTCCAATGCGAAGACTAAGACATGTCGTTTACCAAGCATACTTAGACAAATCATCTTGCAACATGACAGAACAAGCCACAACCAGCACTTGGGGACACATTTAGAGCGGCGATTTGCCTATCATTTTGATGATCATGGTCTTGATGCAAATTCAACACAAGTATTAAGCAAAAAAGGAATTCCCGTATCAGTTTTTTTCTTTGACAAGCGAGAGGGAAGTAAACCAGGAGAACAAGTAGGGAAGATCCTTTCAACAGGCATTGTAAGTGAGCAGTTCCTGGAGATCAAAGTTCTTGATCTTGAACGCGTATTCAGACCTCAGCTGCCTGAGTCTTTAGGTAAGTTAACTAATATCAAGTATCTTAGCTTAAGGTGGACTTACTTGGAGGAATTCCCCCTCTGCATATGCAAACTTATGGAGCTGGAAACACTGGATTTAAAGCATACATGTATCCGTGTCATCCCTAGCTCCATCTGGAAATTGAAGAAGCTGAAGAACTTATATCTGATCCAAAAATATCGAAGTAGACTTGAGGGCAAGCCAAGTGGAAAGTTTGAAGAAAATCTACACACGCTATGGGGTGTGTTCTTGTATGGGAGTTACCCTCTTCTTCGTTACCTCCACAAGCTGAAGAACCTTCAAAAATTAAAATTAGCTTTCCAGTTGACAGAATTAGAGCAAGACACAGTTGCCTCCAAGATTGTGCAGCTGAAACAGCTTAATTCACTGAGACTTAGATCAATAGATGAAGATGGTGATCCTAAAATTGAATAA 2994 0.4061 MNWVELLFWIALTAILFVSVALDCLVIFYEDKVKWIKRKLELLEALTKDYDQLVKKRDEVESGVRHLWELEDLSGGIHLQLSGTENEWVKSTGEVVSKAKRCVARYERHSLGPLLGIITAIFRSMPIISVICEIESVKREMRDHLQKKDEKAKEISKSMENSRSLLDQYKYIIEEADKSVAAQNQKQKQPSTSFEELMKKGEHIFSTMEERRSIYLLLPLHAFVKDLSQLQLETETEKLWKKEAEEVIEDAETLINNYLWWFDWFPIFSILKKFKMPILIVTHQFRKGMRRIVTEFDGLLKRKEKYNLAFIDRAAEKSIFPSIIDDKEITPAMKSIHSKLNNLQKSSKREPEMNSVCHALEEMYKQLQKAEETAGRNACVEQLKSIAQEVDNLLERYMNEPELKRQEIKNATDLLQKIIRICSIKRQKSTKVVGLKNEVRDLVSKLTTSSDNPSTLSIVGMKGVGKTTLAKAVYYKKAVVEHFPIRVWVTVTEGAATRAQVLLMDKHGTKDQTLDVTQVKDHLKEKLCLVVLDNVSKTEDFDKLDETLSGSGWTNGSRIVLTTRSKNVASHADSSSTLHHIHIRLLTMEESWALFVKVAGFEKKVLEPKVEKFARKVVGRCGGLPHEILSLGCVMPAKDITQENNRSWVLSRINHGRHREHWQQAWEKNREELMRGTLIEYLNYFTHFPVDFEIPARRLVNLWVAEGLVQQNDQQTPEDTAEGYLKELRDRNMIQVVALKSNAKTKTCRLPSILRQIILQHDRTSHNQHLGTHLERRFAYHFDDHGLDANSTQVLSKKGIPVSVFFFDKREGSKPGEQVGKILSTGIVSEQFLEIKVLDLERVFRPQLPESLGKLTNIKYLSLRWTYLEEFPLCICKLMELETLDLKHTCIRVIPSSIWKLKKLKNLYLIQKYRSRLEGKPSGKFEENLHTLWGVFLYGSYPLLRYLHKLKNLQKLKLAFQLTELEQDTVASKIVQLKQLNSLRLRSIDEDGDPKIE. 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11672 997 PRINTS Disease resistance protein signature 621 635 - -
Seca4g11672 997 PRINTS Disease resistance protein signature 522 536 - -
Seca4g11672 997 PRINTS Disease resistance protein signature 455 470 - -
Seca4g11672 997 PRINTS Disease resistance protein signature 876 892 - -
Seca4g11672 997 Coils Coil 36 63 - -
Seca4g11672 997 Gene3D - 677 761 IPR036388 -
Seca4g11672 997 Gene3D - 585 676 IPR042197 -
Seca4g11672 997 Gene3D - 408 579 IPR027417 -
Seca4g11672 997 PANTHER DISEASE RESISTANCE PROTEIN RP 240 987 IPR044974 GO:0006952
Seca4g11672 997 Gene3D Ribonuclease Inhibitor 814 991 IPR032675 -
Seca4g11672 997 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 427 640 IPR027417 -
Seca4g11672 997 SUPERFAMILY RNI-like 832 987 - -
Seca4g11672 997 SMART AAA_5 452 587 IPR003593 GO:0016887
Seca4g11672 997 Pfam NB-ARC domain 437 654 IPR002182 GO:0043531
Seca4g11672 997 Coils Coil 134 154 - -
Seca4g11672 997 Coils Coil 380 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11672 Seca-Chr4 256606133 256609126 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11672 409 568 WRKY Transcription Factor Family AT4G12020 27.011 8.86e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11672 - - tpra:123886737 1226.46