Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11671 ATGAGCCGCCTCCCACAAAATCTCATTGATCTCACTTTGTCAGCTTCAAAACTGTCAGATGATCCCATGACAGAGTTGCAGAACCTGCCCGAGCTAAAGTCCTTGTGTCTATATGCTGACTCTTATACAGGGATAAAGATGGTTTGTGCCTCAGGCAGCTTTCGAAAACTTCAAGTGCTGAGATTCTGGAAGTTATGGAACCTGCAAGAATGGGATGTAAAGGATGGAGCGATGCCTAGCCTCGTCGAGTTTGAAGCCCGGTTCTGCGGAAATTTGGAATATCCCACTGGGTTGAAGCATTTGAAAGCTCTTCGCATGATGTGTACACGTGGTCCAGGTGGTGCCAAGGTTCCAACTTCCACTTGTCAGGATAAGTTTCTCAGGTACAAAATATCAACAGAAGCAACTGGCAAGTGGCAGCACACTTCAGAGAACATGTCTACCATTGAGTTATTATTCTGGTTTGTAATAATTGTGGTGTTGGCTGTTTCTCTGATCCTTGATTGTTTGCTCATCTACTATGAAGATAAAGTTAAGTCGATAGAGAAAAAATCTAAGTTACTAGAAGCTCTGATAACGGATTATGATCAACTTGAGAAGGAGCGGGGAAATTTAGAATCAGTAGTCCGTTATTTGTGGGACTTAGAAGACTTATCTGGAATTCATCTGCAGCTAAGTGAAACGGAGAATGAATGGGTAAAAACAACAAGAGAAGTGGTTAATGAAGCAAAATCCTGTGTCTCCGAGTACAACAGACAAAGCCGAGGATTAATTCGTGGCTGTACGACGGCTATCTTTAGATTGATACCCATTATAGTTGTTCTCTATCAAATAGAAACTTTAAAAAATAAGATGAAAGAGCATTTTAAAGAGAAAGATGAGAAAGCCAAGGACATATGTAGATCCATGGAGAGGTCAAGATCTCGGAATAGAAGTTTGCTGGATCAATATACAATTGAAGAAGAGGCCGATAAATCCGTAGCAGCTCAAAACCAGAAGCAGAAGAAGCGTTCAAAAAGTTTAGATGAATTGATGGAGAAGAGCAAAGACCTATTTTCTAGCATGGAAGAGAGATGGTCTATAAATCTTCTGCTTCCACTGTATGCTTTCATGAAGGATTTGAGTCAGCTTCAGTTAGAAACTGAAACAGAAAAGTTCTGGAAAACAGAAGCGGAAAAAATAATTGAAGACGCAGAGGACTACATTAGCAGTTACTCACGGTGGTTTCAAAAAAGAAATAGAGAGGGCATGAAGCGCATTGTCACTGAATTTGATGGCCTGCTTACGAGGAAGGAAAAGTATAATTTTGATTTCTTTGATAGAGCTGCAGAAAAGTCAAGCTTCCTATATACTGCAGATGAAAAAGAAATCACCTCAGCGATTAAAAGCATCAACAACAAGCTGAACAAGCTGGACAAAAGCTCAAAGCAGGTAGCTGAGATGAACTCACTGTATGATACATTGGAAGAAACGCATAGTAAGCTTCAGGAAGCAGAAGAAACAGCAGTAAAAAACGCTTGTTCAGAGCAACTAAAGTCCATTGCTCAAGAGGTGGACAAATTTCTAGAAAGCTATATTAACGGACCTGAGCATAAACGTCATGAGATCACAAAAGCTAGTAAACTTCTACAGAAGATAATAAAAATTTGCAGCATCGAAAGACAGAAGTCAGCAAAAATAGTTGGTTTGAAAAATGAAGTGCGAGATTTGGTCTTGAAGCTGACCACAAGCAGTGATAATCCTTCGAAACTTTCCATTGTGGGGATGAAAGGTGTGGGGAAGACAACTCTGGCAAAGGCAGTTTATTACAACAAAGCTGTGGTCGAGCACTTCCCTATCCGTGTCTGGGTGAAAGTAACTGAGGGAGCTGCCTACAAAGCACAAGTTCTGCTGATGAAAAAGGATGGGTTTAAAGACCAGACGTTGTATGTCACTCAGGTTCGTGATCACTTGAAAGACAAGCTATGCCTTGTTGTTCTAGATAATGTTTCAAAAACAGAAGATTTTGATAAACTAAATGGAATATTATCTGGATCTGGAATGACAAATGGGAGCAGAATAGTGCTGACAACACGCTTTAAGAATGTGGCTTTGCATGCTGACGGTAGTAGCACCCCTCACCAAATTCGACTACTAACAAAGGAAGAGAGTTGGGCGCTGTTTCAGAAGGTGACCAACATTGAAAAATTAGATTCAAATATGGAAAATTTTGCTAAAAAGGTAGTGGGAAGATGTGGGGGCTTACCACTTGCAATCTTATCTCTTGGGTGTGTCATGTTAGCTAAGGGTATAACTCTAAAGAACTTATCATGGGTGTTTAATCGAATCAATCAAGGCCAATACAGAGCACATTGGCAGCGAGCTTGGGAAAGCACCAAACAAGAACTGAGTGAAACTATGAGTAGCTGTCTCCATTACTTCACACACTTTCCCGTAGACTTTGAAATCCCAGCGAGGAGATTAATCAATCTATGGGTTGCAGAAGGGTTGGTGCAACAAAACAAGCAAGAAACACCTGAAGACGCTGCAGAAAGGTGTTTGGAAGATTTGAGAGACCGCAACATGATTCAAGTAGTGGCACTAAAGTCCAATGCGAAGATTAAGACATGTCGTTTACCAAGCATGCTTAGACAAATCATCTTGCACAACGAGGGAACAAGCCACAGCCAGCACTTGGGGACACATTTAGAGAGGCGATTTGCCTATCATTTTGATGATCATGGTCTTGATGCAAATTCAACACAAGTATTAAGCAAAAAAGGAATTCCCGTATCAGTTTTTTTCTTTGACAAGCGAGAGGGAAGTAAACCAGGAGAACAAGTAGGGAAGATCCTTTCAACAGGCATTGTAAGTGAGCAGTTCCTGGAGATCAAAGTTCTTGATCTTGAACGCGTATTCAGACCTCAGCTGCCTGAGTCTTTAGGTAAGTTAACTAATATCAAGTATCTTAGCTTAAGGTGGACTTACTTGGAGGAATTCCCCCTCTGCATATGCAAACTTATGGAGCTGGAAACACTGGATTTAAAGCATACATGTATCCGTGTCATCCCTAGCTCCATCTGGAAATTGAAGAAGCTGAAGAACTTATATCTGATCCAAAAATATCGAAGTAGACTTGAGGGCAAGCCAAGTGGAAAGTTTGAAGAAAATCTACACACGCTATGGGGTGTGTTCTTGTATGGGAGTTACCCTCTTCTTCGTTACCTCCACAAGCTGAAGAACCTTCAAAAATTAAAATTAGCTTTCCAGTTGACAGAATTAGAGCAAGACACAGTTGCCTCCAAGATTGTGCAGCTGAAACAGCTTCAATCACTGAGACTTAGATCAATAAATGAAGATGGTGATCCTAAAATCCTAAAATTGAATAATATGTCAAACCTGGAGAAGCTCTCATCCCTTCAGTTGTTTGGGATGTTAGAAGATAAACTAGGCATGAGCCGCCTCCCACAAAATCTCACTGATCTCACCTTGTCAGCTTCACAACTGCCAAATGATCCTATGACAGAGTTGCAGAACCTGCCCAAGCTCAAGTCGTTGAGTTTTTATGCTGACTCATATACAGGGAAAAAGATGGTTTGTGCCTCAGGCAGCTTTCTACAACTTCAAGTGCTAAGATTTTGGAAGTTAGGGAACCTGGAAGAATGGGATGTTATGGAAGGAGCGATGCCTAGCCTTGTGGAGTTTGAAGTCCGGTCCTGCAGAAATTTGGCATGTCCCACTGGGTTGAAACATTTAAAAGCTCTTCGCATGATAAAGTTACATGAAATGCCAAGTCCATTCAGCAGAGAAATCGAGACGTTATTGAATGACGTTGAGATTGATTCTAAAGATCATCAAGGGACACCCACTCCAGAGGAAAGCTTTTAA 3867 0.4107 MSRLPQNLIDLTLSASKLSDDPMTELQNLPELKSLCLYADSYTGIKMVCASGSFRKLQVLRFWKLWNLQEWDVKDGAMPSLVEFEARFCGNLEYPTGLKHLKALRMMCTRGPGGAKVPTSTCQDKFLRYKISTEATGKWQHTSENMSTIELLFWFVIIVVLAVSLILDCLLIYYEDKVKSIEKKSKLLEALITDYDQLEKERGNLESVVRYLWDLEDLSGIHLQLSETENEWVKTTREVVNEAKSCVSEYNRQSRGLIRGCTTAIFRLIPIIVVLYQIETLKNKMKEHFKEKDEKAKDICRSMERSRSRNRSLLDQYTIEEEADKSVAAQNQKQKKRSKSLDELMEKSKDLFSSMEERWSINLLLPLYAFMKDLSQLQLETETEKFWKTEAEKIIEDAEDYISSYSRWFQKRNREGMKRIVTEFDGLLTRKEKYNFDFFDRAAEKSSFLYTADEKEITSAIKSINNKLNKLDKSSKQVAEMNSLYDTLEETHSKLQEAEETAVKNACSEQLKSIAQEVDKFLESYINGPEHKRHEITKASKLLQKIIKICSIERQKSAKIVGLKNEVRDLVLKLTTSSDNPSKLSIVGMKGVGKTTLAKAVYYNKAVVEHFPIRVWVKVTEGAAYKAQVLLMKKDGFKDQTLYVTQVRDHLKDKLCLVVLDNVSKTEDFDKLNGILSGSGMTNGSRIVLTTRFKNVALHADGSSTPHQIRLLTKEESWALFQKVTNIEKLDSNMENFAKKVVGRCGGLPLAILSLGCVMLAKGITLKNLSWVFNRINQGQYRAHWQRAWESTKQELSETMSSCLHYFTHFPVDFEIPARRLINLWVAEGLVQQNKQETPEDAAERCLEDLRDRNMIQVVALKSNAKIKTCRLPSMLRQIILHNEGTSHSQHLGTHLERRFAYHFDDHGLDANSTQVLSKKGIPVSVFFFDKREGSKPGEQVGKILSTGIVSEQFLEIKVLDLERVFRPQLPESLGKLTNIKYLSLRWTYLEEFPLCICKLMELETLDLKHTCIRVIPSSIWKLKKLKNLYLIQKYRSRLEGKPSGKFEENLHTLWGVFLYGSYPLLRYLHKLKNLQKLKLAFQLTELEQDTVASKIVQLKQLQSLRLRSINEDGDPKILKLNNMSNLEKLSSLQLFGMLEDKLGMSRLPQNLTDLTLSASQLPNDPMTELQNLPKLKSLSFYADSYTGKKMVCASGSFLQLQVLRFWKLGNLEEWDVMEGAMPSLVEFEVRSCRNLACPTGLKHLKALRMIKLHEMPSPFSREIETLLNDVEIDSKDHQGTPTPEESF. 1289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11671 1288 Coils Coil 181 208 - -
Seca4g11671 1288 Gene3D Ribonuclease Inhibitor 1064 1268 IPR032675 -
Seca4g11671 1288 Gene3D Ribonuclease Inhibitor 1 111 IPR032675 -
Seca4g11671 1288 Coils Coil 278 298 - -
Seca4g11671 1288 PRINTS Disease resistance protein signature 583 598 - -
Seca4g11671 1288 PRINTS Disease resistance protein signature 745 759 - -
Seca4g11671 1288 PRINTS Disease resistance protein signature 650 664 - -
Seca4g11671 1288 PRINTS Disease resistance protein signature 1220 1236 - -
Seca4g11671 1288 Coils Coil 471 501 - -
Seca4g11671 1288 Pfam NB-ARC domain 566 803 IPR002182 GO:0043531
Seca4g11671 1288 Gene3D Ribonuclease Inhibitor 933 1055 IPR032675 -
Seca4g11671 1288 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 555 806 IPR027417 -
Seca4g11671 1288 SUPERFAMILY L domain-like 5 107 - -
Seca4g11671 1288 SUPERFAMILY L domain-like 953 1273 - -
Seca4g11671 1288 PANTHER DISEASE RESISTANCE PROTEIN RP 390 1225 IPR044974 GO:0006952
Seca4g11671 1288 Gene3D - 790 883 IPR036388 -
Seca4g11671 1288 Gene3D - 537 707 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11671 Seca-Chr4 256597871 256606068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11671 584 762 WRKY Transcription Factor Family AT5G45050 27.568 1.31e-06 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11671 - - tpra:123886737 1431.77