Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11669 ATGACCATGGAACCAAACCCAACATCAGATCACATTCTAGACTGGCTTGAAGGTTCTGTCTCTTTCTTCCCATCATTCTTGGATGATCCATATAATAACTCTGCTTACATCCAAGAGTATCAGTTGTGGGATCAGGGCCAAGACATAAGTAGCCAGTACCAAACTGATGCCAATACAGGTTCTCCTTCTCCTAATGCCACCAACAGCACTACCACCATTGTTGCTGCTGCTAGTACCACCAGCACAACATCCCTTGAGCCTTATGGTTCCATCAACCTACCACTTTCTGATTTGCCCAAGAAACGAAATGCCACTGATGAATCAAGTCTCAAACCATCACAAAGCCACAAGCACAAAAGAATCAAGAGCCGTCCAATGAATGAAGCTGACAATGGAGATGCAGCTGTTGAAGGGACAGTGGTTAGAAAATCTGGTGGGAACAAGAAAGGTGCAGCTAAGGCCAATGGAAATAACTGTAACAGTGGAAACAACAAGGAAGGTAGGTGGGCTGAGCAGTTGCTTAACCCTTGTGCTGCAGCCATAGCTGGTGGAAACTTGAATCGTGTACAACATCTCTTATATGTTCTCCATGAGCTAGCCTCGCCTACTGGTGATGCTAACCACAGGCTTGCAGCCTATGGTCTCCGAGCACTGACAAACCATCTATCATCTTCTTCATCAGCTACCTCTTCAGGGTCTATAACTTTTGCATCTACAGAACCAAGGTTCTTTCAAAGGTCACTATTGAAGTTCTATGAGGTTAGCCCCTGGTTTTCCTTTCCTAATAACATAGCAAATGCTTCCATCCTTCAAGTTCTTGCTGAAGAACCAAATAGTTCACGTACCCTTCACATCCTTGACATTGGGGTCTCTCATGGTGTTCAATGGCCAACTTTTCTAGAAGCCTTGAGTCGTAGACCTGGTGGACCTCCTCCTCTAGTTCGCCTCACTGTGGTTCCTGCTTCCTCCTCCACTGAAAATGGCCAAAACATGGAGACCCCATTTTCAATAGGTCCACCTGGTGATAACTTCTCTTCTAGACTCCTTGGTTTTGCTCAGTCCATGAATGTCAATTTGCAGATAAACAGGCTCGATAATCAGTCACTGCAGACATTAAATGCTGAAATTATTGACACCTCCCCAGATGAAACTTTTATTGTCTGTGCACAGTTTAGGCTGCACCACTTGAATCATAACACTCCTGATGAAAGAAGTGAGTTTCTGAAGGTGTTGAGAAACATGGAGCCAAAAGGGGTGATAGTAAATGAGAACAACATGGAATGTTGCTGCAGTAGTTGTGGGAATTTCGCTACTGGGTTCTCTCGAAGAGTGGAGTACTTGTGGAGGTTTTTGGATTCAACCAGCTCAGCATTCAAGGGTCGTGAGAGTGATGAAAGAAGGGTGATGGAAGGTGAGGCTGCAAAAGCATTGACAAACCAGCGTGAGATGAATGAAGGGAGAGAAAAATGGTGTGGAAGAATGAAAGAAGCAGGGTTTGTAGGGGAAATATTTGGAGAGGATGCCATTGATGGAGCACGAGCTTTGTTAAGGAAGTATGATAGTAATTGGGAGATGAAAGTAGAAGAGAACAGCACCAGTGTGGGACTATGGTGGAAGGGGCAACCTGTTTCTTTCTGTTCTTTGTGGAAGCTGGATGGAAATGGCCCTTGA 1671 0.4482 MTMEPNPTSDHILDWLEGSVSFFPSFLDDPYNNSAYIQEYQLWDQGQDISSQYQTDANTGSPSPNATNSTTTIVAAASTTSTTSLEPYGSINLPLSDLPKKRNATDESSLKPSQSHKHKRIKSRPMNEADNGDAAVEGTVVRKSGGNKKGAAKANGNNCNSGNNKEGRWAEQLLNPCAAAIAGGNLNRVQHLLYVLHELASPTGDANHRLAAYGLRALTNHLSSSSSATSSGSITFASTEPRFFQRSLLKFYEVSPWFSFPNNIANASILQVLAEEPNSSRTLHILDIGVSHGVQWPTFLEALSRRPGGPPPLVRLTVVPASSSTENGQNMETPFSIGPPGDNFSSRLLGFAQSMNVNLQINRLDNQSLQTLNAEIIDTSPDETFIVCAQFRLHHLNHNTPDERSEFLKVLRNMEPKGVIVNENNMECCCSSCGNFATGFSRRVEYLWRFLDSTSSAFKGRESDERRVMEGEAAKALTNQREMNEGREKWCGRMKEAGFVGEIFGEDAIDGARALLRKYDSNWEMKVEENSTSVGLWWKGQPVSFCSLWKLDGNGP. 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11669 556 MobiDBLite consensus disorder prediction 84 163 - -
Seca4g11669 556 ProSiteProfiles GRAS family profile. 161 550 IPR005202 -
Seca4g11669 556 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 143 538 IPR005202 -
Seca4g11669 556 MobiDBLite consensus disorder prediction 100 114 - -
Seca4g11669 556 Pfam GRAS domain family 171 550 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11669 Seca-Chr4 256589254 256590924 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11669 2 550 GRAS Transcription Factor Family AT3G13840 50.717 5.55e-178 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca4g11669 GRAS 2e-77 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11669 - - mtr:11434050 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11669 4 256589254 256590924 Seca4g11669 4 256589254 256590924 ECH
Seca4g11669 4 256589254 256590924 Seca4g03659 4 63281039 63282367 PCT