Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11668 ATGAAGTGTATATACAATGAATGGAAGGGCTTATTTGGATGGACTTCTGATCTTCGAGCCATATTTGCAAGATCTTGGAGACAACAAGAGTCTACATCCTTAAGAAAGGTGCCTTTTGTTCTCATTGATGTTGGACAGCGGCCAAATACTGAATATGTGATTGTTAACTTAGATGGATCAAGACATCCTTTACCTCTGACAACAGTTTATCATAAATTGCAACCAATAAATGCTTCTCCTTATACTTTCTTGCAAGCACTTTTTGGGCACGAATATCCGGTTGGACTACTAGATGAAGAGAAAATTCTTCCCTTGGGGAAGGATATTAGTGCTGTAGGCCTTTGCAGTTTAAGAAATGGAATTGCTGAAATTAAGTCATGCGAAGATCTACCGTATTTTCTGTCTGACTTGAGTAAAGATCAGATGATTGTAGATCTTTCCTTCAAAACGAAAATACTGTTTTGGAGTGGTATTCTTCTTGGTTCAATGTCTGTTGGGATCCTTGGCTATGCGGTTGTGAGGAACTGTAATAAGTGGAAACAGTGGAAGCAACAGAGGCAGCTCCAGCAACAAAGGCAAACAGTCAGTGGTGATTTTGATCCTCAGCTGGATGACGAGATTGAAAATGTTCCAGACGGACAATTATGTGTTATATGCCTGATGAGGAGAAGGCGTTCTGTTTTCATCCCATGTGGGCATCTAGTATGTTGCCAAGGGTGTGCCATATCAGTTGAACGTGAAGTAGCACCGAAGTGTCCTGTCTGTCGTCAGGAGATTCGAGATTCTGTGCGGATTTTTGAATCTTGA 807 0.4102 MKCIYNEWKGLFGWTSDLRAIFARSWRQQESTSLRKVPFVLIDVGQRPNTEYVIVNLDGSRHPLPLTTVYHKLQPINASPYTFLQALFGHEYPVGLLDEEKILPLGKDISAVGLCSLRNGIAEIKSCEDLPYFLSDLSKDQMIVDLSFKTKILFWSGILLGSMSVGILGYAVVRNCNKWKQWKQQRQLQQQRQTVSGDFDPQLDDEIENVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEREVAPKCPVCRQEIRDSVRIFES. 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11668 268 CDD RING-HC_SPL2-like 211 257 - -
Seca4g11668 268 Pfam E3 Ubiquitin ligase 21 167 IPR022170 GO:0004842|GO:0006996|GO:0016567
Seca4g11668 268 SUPERFAMILY RING/U-box 211 261 - -
Seca4g11668 268 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 2 268 IPR044247 GO:0004842
Seca4g11668 268 Pfam Zinc finger, C3HC4 type (RING finger) 214 261 - -
Seca4g11668 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 268 IPR013083 -
Seca4g11668 268 ProSiteProfiles Zinc finger RING-type profile. 216 256 IPR001841 -
Seca4g11668 268 SMART ring_2 216 255 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11668 Seca-Chr4 256583793 256588583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11668 213 265 C3H Transcription Factor Family AT3G06140 39.623 1.76e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11668 K15688 - gmx:100800058 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11668 4 256583793 256588583 Seca4g11668 4 256583793 256588583 ECH