Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11662 ATGCCTACAAAGAAGCTTCAATGGAGATCATTGGTACTAGGCTGTTTCAAGGCCAAGGACCTATCTTTGGAAACCCCGAACATAGTTCCCAAGAAGTCATCTTCAAGTAGAATCTCCATCTCTGATTTAAGTGATTATTCATCACTCTCTATCATGAGTGATTTGTCCAATTCTCTTGTGGGATCAAATCTTCAAATTTTCACTTACAAGGAACTCAAAGAGGTTACACACAATTTCAGCAAATCCAACTTTCTTGGGGAAGGTGGATTTGGGAAGGTATATAAAGGGTTCATTGATGACAAGCTTAGGCCTACTCTGACTCCTCGGGTTGTAGCAGTTAAGGCCTTAAATTTGGATGGAAAACAAGGCCACAGAGAGTGGTTGGCTGAAGTAATCATTCTGGGGCAGTTGAAGCATCGTCATCTTGTTAATTTAATTGGCTATTGCTGTGAAGATGAGAACAGGCTTCTTGTGTATGAATACATGGAGAGGGGAAATCTTGAGGATAAGCTTTTCAATGGTTACTTAGCAACCTTGCCTTGGCTAACAAGAATCAAAATAGCAATTGGGGCTGCAAAGGGACTTGCTTTCCTTCATGAAGAAGAGAAACCAGTCATATATAGAGATATTAAAGCCTCAAACATTCTATTGGATGCTGATTACAATGCCAAGCTCTCAGATTTTGGTTTAGCAATAGATGGACCAGAAAAAGATCAAACACATGTTACAACTCGTGTGATGGGTACTCATGGTTATGCTGCTCCAGAGTATATCATGACAGGTATTTACTCAAAACCAATTTCAAACCAACCCCTTTAA 819 0.398 MPTKKLQWRSLVLGCFKAKDLSLETPNIVPKKSSSSRISISDLSDYSSLSIMSDLSNSLVGSNLQIFTYKELKEVTHNFSKSNFLGEGGFGKVYKGFIDDKLRPTLTPRVVAVKALNLDGKQGHREWLAEVIILGQLKHRHLVNLIGYCCEDENRLLVYEYMERGNLEDKLFNGYLATLPWLTRIKIAIGAAKGLAFLHEEEKPVIYRDIKASNILLDADYNAKLSDFGLAIDGPEKDQTHVTTRVMGTHGYAAPEYIMTGIYSKPISNQPL. 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11662 272 FunFam Serine/threonine-protein kinase BIK1 46 161 - -
Seca4g11662 272 Gene3D Transferase(Phosphotransferase) domain 1 162 267 - -
Seca4g11662 272 SMART serkin_6 79 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11662 272 ProSitePatterns Protein kinases ATP-binding region signature. 85 114 IPR017441 GO:0005524
Seca4g11662 272 FunFam Os07g0541700 protein 162 249 - -
Seca4g11662 272 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Seca4g11662 272 Pfam Protein tyrosine and serine/threonine kinase 82 264 IPR001245 GO:0004672|GO:0006468
Seca4g11662 272 PANTHER OS01G0588500 PROTEIN-RELATED 41 264 - -
Seca4g11662 272 Gene3D Phosphorylase Kinase; domain 1 50 161 - -
Seca4g11662 272 SUPERFAMILY Protein kinase-like (PK-like) 54 265 IPR011009 -
Seca4g11662 272 ProSiteProfiles Protein kinase domain profile. 79 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11662 Seca-Chr4 256535847 256537173 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11662 65 261 Glycoside Hydrolase AT3G07070 55.000 1.43e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca4g11662 PK_Tyr_Ser-Thr 2.5e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11662 - - gmx:100790454 432.565