Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11660 ATGTCAATTGAATTATTGGCATCAGCTGCTCCCAGTTGGGTCACAACTGCAGCCACATGGTTTGCAACCATTGCCATCCTCCTCCTCTTCAGCCGCCGTCTCCGCCACCGCAGATATAACCTTCCACCAGGCCCAAAACCATGGCCCATCATAGGAAACCTCAACCTAATTGGATCTCTCCCACACCGATCCATCCACTCTCTCAGCCAAAAGTATGGACCCATCATGCATGTCTGGTTCGGCTCCAACCCTGTCGTTGTGGGCTCATCCGTGTACATGGCAAAAGCCTTCCTCAAAACCCACGACGCCACCATCGCCGGCAGGCCCAAATTCGCTGCCGGCAAGTACACAACCTACAACTATTCAGACATAACTTGGTCCCAATACGGCCCATACTGGCGTCAGGCCCGTAAAATGTGCCTAATGGAATTGTTCAGCGCCAAACGCCTTGAGTCCTATGAGTACATTAGAAAGCAAGAGTTACATGCTTTTCTGAATGAACTCTTTAAATCTGCAAACAAAACTATTTTGTTGAAAGATCACCTTTCTGATTTGAGCCTTAATGTTATAAGCCGCATGGTGTTGGGGAAGAAGTATACAGAAAAGTCAGAGAACACAATAATTTCCCCTGAGGAGTTCAAGAAGATGCTGGATGAGTTGTTCTTGCTTAATGGGGTGCTTAACATTGGGGATTTCATTCCTTGGATTAATTTCTTGGATTTACAGGGTTACATAAAGAGGATGAAGGCTTTGAGCAAGAAATTTGATAGGTTTATGGAGCATGTGTTGGAGGAACATATTGAGAGAAGGAAAGGGGTGAAGGATTATGTTGCTAAAGATATGGTGGATGTGCTTTTGCAGCTTGCAGAGGACCCTGCTCTTGAGGTTAAGCTTGAGAGGCATGGAGTCAAAGCTTTTAGTCAGGTAAACGTGTATTTTCTATTTTCAAATTCTTTGATTTGTTTGGCTAATCTTGTCAATTTGCGACTTGACCTAATAGCAGGTGGGACAGAGAGCTCAGCTGTAACAGTAGAATGGGGAATTTCTGAGCTCTTGAGAAAGCCAGAGATCTTCAAGAAGGCGACAGAGGAGCTAGACAGGGTGATAGGGAGAGATAGATGGGTTGAAGAGAATGACATTGTCAATTTACCATACATTAATGCCATTGCTAAGGAAACAATGAGGCTTCACCCTGTGGCACCAATGCTTGTGCCAAGGTTAGCCAGGGAGGACTTCAATGTTGATGGATATGATATCCCCAAAGGGACTCAAGTGCTTGTTAATACTTGGACTATTAGCAGAGATCCTGAAATTTGGGACAATCCAGATGAATTTCAACCAGAGAGGTTTCTAGATAAGGAGATAGATGTCAAAGGGCATGACTATGAGTTGTTGCCATTTGGTGCAGGTAGAAGGATGTGCCCTGGGTACCCTCTTGGCCTTAAGGTCATTCAATCAAGTTTGGCTAACCTATTGCATGGCTTTAATTGGAGACTGCCTGATAATACAAAGAAGGAGGACTTGAATATGGAGGAGATTTTTGGGCTGTCCACACCTAAGAAAATACCTCTAGAAACTGTTGTTGAGCCTAGACTTCCAGATCATCTTTATTCCCTCTGA 1620 0.4444 MSIELLASAAPSWVTTAATWFATIAILLLFSRRLRHRRYNLPPGPKPWPIIGNLNLIGSLPHRSIHSLSQKYGPIMHVWFGSNPVVVGSSVYMAKAFLKTHDATIAGRPKFAAGKYTTYNYSDITWSQYGPYWRQARKMCLMELFSAKRLESYEYIRKQELHAFLNELFKSANKTILLKDHLSDLSLNVISRMVLGKKYTEKSENTIISPEEFKKMLDELFLLNGVLNIGDFIPWINFLDLQGYIKRMKALSKKFDRFMEHVLEEHIERRKGVKDYVAKDMVDVLLQLAEDPALEVKLERHGVKAFSQVNVYFLFSNSLICLANLVNLRLDLIAGGTESSAVTVEWGISELLRKPEIFKKATEELDRVIGRDRWVEENDIVNLPYINAIAKETMRLHPVAPMLVPRLAREDFNVDGYDIPKGTQVLVNTWTISRDPEIWDNPDEFQPERFLDKEIDVKGHDYELLPFGAGRRMCPGYPLGLKVIQSSLANLLHGFNWRLPDNTKKEDLNMEEIFGLSTPKKIPLETVVEPRLPDHLYSL. 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11660 539 CDD CYP71_clan 73 524 - -
Seca4g11660 539 PRINTS P450 superfamily signature 335 352 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11660 539 PRINTS P450 superfamily signature 388 399 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11660 539 PRINTS P450 superfamily signature 465 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11660 539 Gene3D Cytochrome P450 34 535 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11660 539 PRINTS E-class P450 group I signature 428 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11660 539 PRINTS E-class P450 group I signature 387 405 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11660 539 PRINTS E-class P450 group I signature 474 497 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11660 539 PRINTS E-class P450 group I signature 324 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11660 539 PRINTS E-class P450 group I signature 464 474 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11660 539 PRINTS E-class P450 group I signature 93 114 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11660 539 PRINTS E-class P450 group I signature 185 203 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11660 539 PRINTS E-class P450 group I signature 69 88 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11660 539 PRINTS E-class P450 group I signature 344 370 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11660 539 PANTHER CYTOCHROME P450 98A9 18 538 - -
Seca4g11660 539 FunFam Cytochrome P450 84A1 33 532 - -
Seca4g11660 539 Pfam Cytochrome P450 42 519 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11660 539 SUPERFAMILY Cytochrome P450 42 531 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca4g11660 539 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 467 476 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11660 Seca-Chr4 256512917 256515733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11660 18 539 Cytochrome P450 AT5G07990 40.935 7.74e-140 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11660 K20623 - gmx:100790480 895.575