Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11642 ATGGCCGTAGCTCTGGCAATTCTCCATCCAACTCTCTTCTTCTTCTTCTTCTTCTTCTTCATCATCACTCTGCCTGTGATATGTTCCCTGTCAGAAGCTGAAGCTTTGTTGGCTCTGAAAAACTCATTCTCCAATGCTGAGGCTCTTGAAAGTTGGGTGGCTGACTCTATTCCTTGCACAGAAGATGATCAATGGGAAGGCATTGTTTGTTACAATGGCATTGTCACAGGGCTTCGCCTTGGAGGAATGGGGCTACTAGGGAAAATAGATGTTGATGCATTGCTTGAGCTTAAGGGTCTTAGAACTATAAGCTTTGTGAACAATGCTTTCTCAGGTCCCATCCCAGAACTCAATAAAATTGGTTTCTTGAAAGCCATTTATTTGCAAGGAAACAAGTTTTCAGGGGATATTCCTCAGGAATATTTCCAAGGAATGAGGTCTTTGAAGAAAATTTGGCTATCTAATAACCAATTCACAGGGAAGATTCCATCATCATTGTCTCAGGTTCCTCAGCTTATGGAGTTGCATCTTGAAAACAACCAGTTTAGTGGAGCCATTCCTAATCTGGAAAACCCTACATTGCTGAAACTCAATCTGTCCAACAACAAATTGGAAGGTGAAGTCCCAACTAGTTTGTTGAAATTCCAAGAGAGCTCATTTGCAGGGAATTCTGGTCTTTGTGGTGACAAGTTTGGCAAATCATGTGAAAACCCAACAGAGGACAAAAATCCCACTGAGGAACAAAATAATGGAGAGGCTAGCCACAATAAAGGTAATGCAGCACATATTGCTGGCATTGTTGTGGCCAGTTTAGTGATTATCTCACTTATAGTCTTTTTACTTGTGAGATCAAAGAGAAAGAAGGATGAGGCTTTTGATATGCTTGGACAAGATATGAATGAGGGTGCTGTTGAAGTTCAGGTAACTGCACCAGTGAAAAGGGAAGTGGATACACTGAGAAAAGTATCATCTAGCAGAAGGGGAGCTAATAAGGGGGTTGGAGAACTTGTGATGGTGAATGATGAGAAGGGTGCTTTTGGGTTGCCAGATTTGATGAAGGCAGCTGCAGAGGTGCTAGGAAATGGAGGGTTTGGATCATCTTATAAAGCTGTGATGTCTAATGGCGTGGCAGTTGTGGTGAAAAGGACCAGAGAGATGAATGGATTGGGAAAAGATGGTTTTGATGCAGAAATGAGGAGGCTTGGAAGGCTAAAACACTGGAATATATTGACCCCTTTAGCTTATCATTACAGAAAGGAAGAGAAACTAGTGATCTCTGAGTATGTTCCCAGAGGCAGTCTACTTTTCTTGCTGCATGGTGATAGGGGACCATCACATGCTGAACTGAATTGGCCTGCTCGTTTTAAGATTGTACAAGGAATTGCTGAAGGGATGCGTTATCTTCACACAGAACTTGCAGCCTCTGATCTACCACATGGCAATCTCAAGTCAAGCAATGTTCTCCTTGGACCAGATTATGAAGCAATGCTTGTAGATTATGGGTTTGTCCATTTGGTTAACCCTTCCACTGTTACAAATGCACTAATTGCTTATAAGGCTCCTGAAGCATTACAACATGGCAAAGTTTCACGTAGTTGTGATGTTTATTGTCTTGGCATTGTCATTCTTGAGATACTCACTGGAAAATTCCCTTCCCAATATCTTAGCAATGGTAAAGGTGGGACTGATGTAGTTCAATGGGTTGCATCAGCAATTTCTGAGGGAAGGGAATCAGAACTACTTGATCCTGAAATTGCAAGCTCTAAGAGTTCACTGGTTGAAATGGAGCAACTCTTACACATTGGTGCTGCTTGCACTGAAAGTAACCCTCAGAGGAGATTAGACATGATGGAAGCTGTTAGGAGGATAGAGGAGATAAAAACCAAAGGTGTTGGTCAAGAATCAAGAACAATAGAGGTGTTGCCATCTCTGGGAGATGGTTATGCAGAATCTCAAGTGTTTGATGACCAATCACGGAGGAGACATGCAACAAACAGCTTTGGAAGCAGGGATAAACTTGAATTTGGCATCTCCTAA 2037 0.4212 MAVALAILHPTLFFFFFFFFIITLPVICSLSEAEALLALKNSFSNAEALESWVADSIPCTEDDQWEGIVCYNGIVTGLRLGGMGLLGKIDVDALLELKGLRTISFVNNAFSGPIPELNKIGFLKAIYLQGNKFSGDIPQEYFQGMRSLKKIWLSNNQFTGKIPSSLSQVPQLMELHLENNQFSGAIPNLENPTLLKLNLSNNKLEGEVPTSLLKFQESSFAGNSGLCGDKFGKSCENPTEDKNPTEEQNNGEASHNKGNAAHIAGIVVASLVIISLIVFLLVRSKRKKDEAFDMLGQDMNEGAVEVQVTAPVKREVDTLRKVSSSRRGANKGVGELVMVNDEKGAFGLPDLMKAAAEVLGNGGFGSSYKAVMSNGVAVVVKRTREMNGLGKDGFDAEMRRLGRLKHWNILTPLAYHYRKEEKLVISEYVPRGSLLFLLHGDRGPSHAELNWPARFKIVQGIAEGMRYLHTELAASDLPHGNLKSSNVLLGPDYEAMLVDYGFVHLVNPSTVTNALIAYKAPEALQHGKVSRSCDVYCLGIVILEILTGKFPSQYLSNGKGGTDVVQWVASAISEGRESELLDPEIASSKSSLVEMEQLLHIGAACTESNPQRRLDMMEAVRRIEEIKTKGVGQESRTIEVLPSLGDGYAESQVFDDQSRRRHATNSFGSRDKLEFGIS. 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11642 678 Gene3D Phosphorylase Kinase; domain 1 321 428 - -
Seca4g11642 678 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Seca4g11642 678 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 91 186 - -
Seca4g11642 678 Pfam Protein kinase domain 357 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11642 678 Gene3D Ribonuclease Inhibitor 31 189 IPR032675 -
Seca4g11642 678 Gene3D Ribonuclease Inhibitor 190 237 IPR032675 -
Seca4g11642 678 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 629 IPR046959 -
Seca4g11642 678 SUPERFAMILY Protein kinase-like (PK-like) 357 623 IPR011009 -
Seca4g11642 678 MobiDBLite consensus disorder prediction 655 678 - -
Seca4g11642 678 Gene3D Transferase(Phosphotransferase) domain 1 429 640 - -
Seca4g11642 678 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515
Seca4g11642 678 ProSiteProfiles Protein kinase domain profile. 353 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11642 678 MobiDBLite consensus disorder prediction 235 256 - -
Seca4g11642 678 SUPERFAMILY L domain-like 28 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11642 Seca-Chr4 256278156 256281032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11642 11 626 Receptor kinase-like Gene Family AT3G42880 47.105 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca4g11642 Pkinase 1.9e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11642 - - tpra:123886727 900.582