Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11641 ATGTCATCTTTCCCTAATTCGGTATCCGATGGCCGGAAGTCCGGCAAGGCACCGGAGAAGTCCAATTTCTCACAAACTTGTAGCCTCCTCAGCCAGTTCTTGAAGGAGAAGCGCATCTCTGGAGATTCTACCCCTGGAATTGCTGCCAAAATGGACCCTAGAGCAAGTACGAAAGATTTGTTAGCCAATCTACAAAAACCAGATGGGACTTTGAGACTACACGCATCTGCTATGGATTCCCTTCCCCAGCTTGTGGAAAACCCCTGCATTAAGAAGTCTAATGATAGGTCATCAGGGTCTGAAACTCCCCAAATGACAATATTCTATTGCGGAAAAATGTTAGTATTTGATGGCTTTCCACCAGAGAAGGCAACAGAGGTAATGGAATTAGCCACCAAGTTAGCCTCTGACACTTCTAACCCTGAAGAAAAAAACCCCCCAAGTGCTCCAGTCACTACTGAAAAATTGAACGAATCCAAAGCACCACAAACAAACACTGCCTCTGCCTCAGAAACCCCTCGACCAGCTGTTGGTTCAGGTATAAGAACAAATAAAACTAAATAG 564 0.4504 MSSFPNSVSDGRKSGKAPEKSNFSQTCSLLSQFLKEKRISGDSTPGIAAKMDPRASTKDLLANLQKPDGTLRLHASAMDSLPQLVENPCIKKSNDRSSGSETPQMTIFYCGKMLVFDGFPPEKATEVMELATKLASDTSNPEEKNPPSAPVTTEKLNESKAPQTNTASASETPRPAVGSGIRTNKTK. 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11641 187 ProSiteProfiles Tify domain profile. 98 133 IPR010399 -
Seca4g11641 187 MobiDBLite consensus disorder prediction 130 187 - -
Seca4g11641 187 SMART tify_2 98 133 IPR010399 -
Seca4g11641 187 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 13 168 IPR040390 -
Seca4g11641 187 MobiDBLite consensus disorder prediction 1 23 - -
Seca4g11641 187 Pfam tify domain 101 131 IPR010399 -
Seca4g11641 187 MobiDBLite consensus disorder prediction 132 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11641 Seca-Chr4 256231175 256233300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11641 14 158 Tify Gene Family AT1G72450 32.121 1.24e-16 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Seca4g11641 tify 9.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11641 K13464 - gmx:100778559 247.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11641 4 256231175 256233300 Seca4g11641 4 256231175 256233300 ECH